Bioconductor RRBS

Showing : RRBS • reset

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1.3k

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edgeR model-selection RRBS mixture-experiment

3.9 years ago ingerslev • 0

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1.1k

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MethylCC RRBS cord blood

4.6 years ago weichen-cls • 0

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952

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Biseq Methylation DMP DMR RRBS

4.6 years ago i.s.castanho • 0

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808

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biseq betaRegression RRBS Methylation

4.9 years ago i.s.castanho • 0

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2.5k

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edgeR rrbs

updated 6.1 years ago by Gordon Smyth 52k • written 6.1 years ago by ingerslev • 0

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2.8k

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methykit rrbs

updated 6.8 years ago by Mike Smith ★ 6.6k • written 6.8 years ago by bekah ▴ 40

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1.8k

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edgeR methyation RRBS

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by osa.zuta ▴ 40

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1.3k

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biseq RRBS betaregression

7.9 years ago l.eijssen • 0

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2.2k

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sva RRBS

updated 8.0 years ago by Jeff Leek ▴ 650 • written 8.0 years ago by mrodrigues.fernanda ▴ 10

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2.0k

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rrbs batch effect methylation sva

updated 8.4 years ago by dashbrook1 • 0 • written 9.6 years ago by GFM ▴ 20

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1.7k

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limma rrbs bsseq

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by nhejazi • 0

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2.4k

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biseq RRBS SAAP-BS coverage

9.8 years ago maria.maqueda • 0

12 results • Page 1 of 1

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Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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