Bioconductor RRBS

Showing : RRBS • reset

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1.2k

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edgeR model-selection RRBS mixture-experiment

3.6 years ago ingerslev • 0

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1.0k

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MethylCC RRBS cord blood

4.3 years ago weichen-cls • 0

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889

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Biseq Methylation DMP DMR RRBS

4.3 years ago i.s.castanho • 0

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746

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biseq betaRegression RRBS Methylation

4.6 years ago i.s.castanho • 0

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2.4k

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edgeR rrbs

updated 5.8 years ago by Gordon Smyth 51k • written 5.9 years ago by ingerslev • 0

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2.6k

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methykit rrbs

updated 6.5 years ago by Mike Smith ★ 6.6k • written 6.5 years ago by bekah ▴ 40

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1.7k

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edgeR methyation RRBS

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by osa.zuta ▴ 40

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1.2k

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biseq RRBS betaregression

7.6 years ago l.eijssen • 0

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2.0k

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sva RRBS

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by mrodrigues.fernanda ▴ 10

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1.9k

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rrbs batch effect methylation sva

updated 8.1 years ago by dashbrook1 • 0 • written 9.3 years ago by GFM ▴ 20

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1.6k

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limma rrbs bsseq

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by nhejazi • 0

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2.2k

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biseq RRBS SAAP-BS coverage

9.5 years ago maria.maqueda • 0

12 results • Page 1 of 1

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k