Bioconductor RRBS

Showing : RRBS • reset

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1.4k

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edgeR model-selection RRBS mixture-experiment

4.0 years ago ingerslev • 0

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1.2k

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MethylCC RRBS cord blood

4.8 years ago weichen-cls • 0

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984

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Biseq Methylation DMP DMR RRBS

4.8 years ago i.s.castanho • 0

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842

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biseq betaRegression RRBS Methylation

5.1 years ago i.s.castanho • 0

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2.7k

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edgeR rrbs

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by ingerslev • 0

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3.0k

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methykit rrbs

updated 6.9 years ago by Mike Smith ★ 6.6k • written 6.9 years ago by bekah ▴ 40

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1.9k

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edgeR methyation RRBS

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by osa.zuta ▴ 40

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1.3k

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biseq RRBS betaregression

8.1 years ago l.eijssen • 0

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2.3k

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sva RRBS

updated 8.1 years ago by Jeff Leek ▴ 650 • written 8.1 years ago by mrodrigues.fernanda ▴ 10

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2.0k

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rrbs batch effect methylation sva

updated 8.6 years ago by dashbrook1 • 0 • written 9.8 years ago by GFM ▴ 20

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1.8k

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limma rrbs bsseq

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by nhejazi • 0

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2.4k

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biseq RRBS SAAP-BS coverage

10.0 years ago maria.maqueda • 0

12 results • Page 1 of 1

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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Awards • All

Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k