Bioconductor ROPLS

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367

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Metabolomics plotGrouper Bioconductor ropls PLSDAbatch

6 months ago devarti.mahakalkar • 0

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1.7k

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crlmm ropls Metabolomics

updated 18 months ago by James W. MacDonald 67k • written 18 months ago by Charlotte • 0

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848

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Metabolomics ropls

updated 2.0 years ago by etienne.thevenot ▴ 40 • written 2.0 years ago by ansari.maya022 • 0

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959

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Metabolomics ropls

updated 2.1 years ago by etienne.thevenot ▴ 40 • written 2.1 years ago by ansari.maya022 • 0

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1.5k

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ropls

2.5 years ago g0079 • 0

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3.3k

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s-plot ropls opls-da rna-seq

updated 3.4 years ago by Nathalie ▴ 10 • written 4.5 years ago by andreia ▴ 10

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2.0k

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metabolomicsWorkbenchR PLS OPLS Metabolomics ropls

updated 3.4 years ago by etienne.thevenot ▴ 40 • written 3.4 years ago by Fernando • 0

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798

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ropls

4.4 years ago guido.guberman • 0

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1.1k

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ropls

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by tor.demmers • 0

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1.2k

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ropls

updated 6.6 years ago by etienne.thevenot ▴ 40 • written 6.6 years ago by scottericr • 0

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1.7k

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R ropls

updated 6.7 years ago by etienne.thevenot ▴ 40 • written 6.7 years ago by yuan.guo001 • 0

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2.2k

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ROPLS LPS-DA

6.8 years ago abigailrandall85 • 0

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3.7k

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plsda ropls

updated 7.3 years ago by etienne.thevenot ▴ 40 • written 7.3 years ago by michael.eisenring ▴ 10

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5.7k

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ropls

updated 8.5 years ago by etienne.thevenot ▴ 40 • written 8.5 years ago by dominik.guggisberg • 0

14 results • Page 1 of 1

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Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0

So I changed it to ~0 + group (with the same plot), but I still don't know if it's good or what to fix if not.

Answer: Newbie Question - adding metadata to an analysis by James W. MacDonald 67k

See [Section 4][1]. But do note that you do not need for the `phenoData` slot to contain the data. You can simply have a 'targets' data.fra…

Comment: Want numbers in DESeq to be seen as numerical, not categorical by swbarnes2 ★ 1.4k

How did you import the data? Did you accidently leave in `stringAsFactors=True`? But I'm not entirely sure that you don't want that to be…

Comment: MissMethyl failed to use gometh function for EPICv2 by James W. MacDonald 67k

By version 1.38.0, I mean version 1.38.0 of `MissMethyl`.

Answer: MissMethyl failed to use gometh function for EPICv2 by James W. MacDonald 67k

You need to [upgrade to the release version of Bioconductor][1]. You have version 1.38.0 installed which indicates that you are using the p…

Votes

Comment: How do I fix an odd voom plot in a combined dataset?

Comment: Theoretical WGCNA Question

Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a

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Scholar to Michael Love 43k