Bioconductor RNASeqPower

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244

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RNA RNASeqPower DEGseq

updated 4 weeks ago by Gordon Smyth 52k • written 4 weeks ago by Jonathan • 0

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524

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featurecounts rnas RNASeqPower

10 weeks ago • updated 9 weeks ago yasmin.hilliam ▴ 10

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348

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RNASeqPower removeBatchEffect cpm Batcheffect

12 weeks ago sukeshinik5 ▴ 20

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RNASeqData RnaSeqSampleSize RNASeq RNASeqPower

12 months ago drewhaydensteele • 0

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679

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RNASeqData RnaSeqSampleSize RNASeqPower RNASeq

updated 14 months ago by Basti ▴ 780 • written 14 months ago by Luke • 0

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RNASeqPower edgeR DifferentialExpression limma RNASeq

updated 19 months ago by Gordon Smyth 52k • written 19 months ago by Sara • 0

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642

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RNASeqPower citation

2.5 years ago stephenjjohnson • 0

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edgeR limma RNASeqPower

updated 2.8 years ago by Gordon Smyth 52k • written 3.8 years ago by Ahdee ▴ 50

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rnaseqpower sspa sample size sequencing complex-design

updated 8.8 years ago by m.van_iterson ▴ 20 • written 8.9 years ago by roser.navarro • 0

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rnaseqpower

10.2 years ago drnknmstrr • 0

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edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower

10.8 years ago Guest User ★ 13k

11 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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