Showing : RNASeqPower • reset
0
votes
3
replies
396
views
Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA RNASeqPower DEGseq
written 4 months ago by • 0
1
vote
3
replies
1.0k
views
featureCounts fails to load annotation file
featurecounts rnas RNASeqPower
5 months ago yasmin.hilliam ▴ 10
2
votes
2
replies
500
views
Batch adjustment for cohort based RNA seq data
RNASeqPower removeBatchEffect cpm Batcheffect
6 months ago sukeshinik5 ▴ 20
1
vote
2
replies
910
views
RNASeq time course analysis, missing time points for control
RNASeqData RnaSeqSampleSize RNASeq RNASeqPower
16 months ago drewhaydensteele • 0
0
votes
1
reply
790
views
Comparing RNASeq data from multiple studies
RNASeqData RnaSeqSampleSize RNASeqPower RNASeq
updated 18 months ago by ▴ 780 • written 18 months ago by • 0
1
vote
3
replies
1.3k
views
Is it okay to increase filtering to get more significant Adjusted P Values for DEGs found using Limma?
RNASeqPower edgeR DifferentialExpression limma RNASeq
updated 23 months ago by 52k • written 23 months ago by • 0
0
votes
0
replies
677
views
Typo in citation for RNASeqPower
RNASeqPower citation
2.8 years ago stephenjjohnson • 0
0
votes
3
replies
2.8k
views
How to calculate coefficient of variation within group?
edgeR limma RNASeqPower
updated 3.1 years ago by 52k • written 4.1 years ago by ▴ 60
0
votes
5
replies
2.7k
views
getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 9.1 years ago by ▴ 20 • written 9.1 years ago by • 0
0
votes
1
reply
1.3k
views
Depth or # of reads for RNASeqPower
rnaseqpower
10.5 years ago drnknmstrr • 0
0
votes
0
replies
1.2k
views
Power Calculation of multiple factors design of RNA-sequencing study
edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower
11.1 years ago Guest User ★ 13k
11 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
Awards • All
Popular Question to bd2000 ▴ 30
Popular Question to shepherl 4.1k
Scholar to Michael Love 43k
Popular Question to Rob • 0
Popular Question to Gordon Smyth 52k
Locations • All
India, 3 hours ago
United States, 4 hours ago
United States, 4 hours ago
India, 4 hours ago
United Kingdom, 6 hours ago
Traffic: 811 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6