Bioconductor RNA

Showing : RNA • reset

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369

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RNA RNASeqPower DEGseq

written 3 months ago by Jonathan • 0

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657

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GEO rnaseqGene RNA

7 months ago gallantk5 • 0

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1.3k

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fgsea rna

updated 13 months ago by James W. MacDonald 68k • written 13 months ago by Gordon • 0

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670

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RNA DESeq2

updated 13 months ago by Michael Love 43k • written 13 months ago by manuel • 0

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1.8k

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biomaRt ensembldb RNA ensembl

updated 23 months ago by Johannes Rainer ★ 2.1k • written 23 months ago by Christopher • 0

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3.0k

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Log2 edgeR RNA limma Normalization

2.3 years ago Sara • 0

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752

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RNASeq FeatureCounts Rna

2.4 years ago rridley3 • 0

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1.0k

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 2.5 years ago by ATpoint ★ 4.7k • written 2.5 years ago by Mohamed ▴ 30

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987

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MassSpectrometryData RNA DifferentialExpression

2.6 years ago António Miguel de Jesus Domingues ▴ 510

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1.1k

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RNA Alignment Rsubread

2.6 years ago • updated 2.5 years ago sreekalasn • 0

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1.4k

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RNAseq123 Rna

updated 2.7 years ago by Gordon Smyth 52k • written 2.7 years ago by Mikołaj Mierzejewski • 0

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2.2k

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RNA Combat sva R

2.8 years ago takemoto • 0

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1.0k

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methylation RNA native epitranscriptomics

updated 3.0 years ago by tcalvo ▴ 100 • written 3.0 years ago by megha.hs28 ▴ 10

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1.1k

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tximport rna rnaseqGene biomaRt

updated 3.2 years ago by ATpoint ★ 4.7k • written 3.2 years ago by st3472 • 0

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837

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RNA Normalization

3.9 years ago nancy • 0

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1.8k

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limma edgeR rna

3.9 years ago Nirad ▴ 10

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2.8k

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edgeR RNASeq

updated 4.3 years ago by Gordon Smyth 52k • written 4.3 years ago by weichengz ▴ 10

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3.2k

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annotation rna

updated 4.4 years ago by James W. MacDonald 68k • written 4.4 years ago by anthony.nash ▴ 20

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1.6k

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affy rna hta2.0 r

updated 4.8 years ago by James W. MacDonald 68k • written 4.8 years ago by Marco_aurelio • 0

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1.1k

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deseq2 RNA

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by agsousa • 0

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1.8k

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deseq2 RNA RNASeq

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by stephen.hartley • 0

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1.1k

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single cell RNA Data analysis Bioinformatics Job

5.7 years ago jmaanaki • 0

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1.7k

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RNA WGCNA filter

5.7 years ago modarzi ▴ 10

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1.1k

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RNA DESeq2

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by Merlin ▴ 10

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1.0k

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deseq2 RNA

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by Merlin ▴ 10

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1.8k

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rna singlecell limma

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by hrishi27n ▴ 20

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1.9k

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rna-seq rna

updated 6.0 years ago by Steve Lianoglou ★ 13k • written 6.0 years ago by Anthony Nash ▴ 20

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1.2k

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computational biology molecular biology RNA r-loop ncRNA Job

6.4 years ago l.brown ▴ 10

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1.2k

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r code rna wobble

7.1 years ago fawazfebin ▴ 60

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1.2k

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RNA rnaseq deseq2

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by hrishi27n ▴ 20

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1.6k

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deseq2 RNA rnaseq

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by hrishi27n ▴ 20

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2.1k

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outliers rna microarray

updated 7.8 years ago by chris86 ▴ 420 • written 7.8 years ago by bhgyu ▴ 30

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1.6k

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DGE rnaseq RNA edger

updated 7.8 years ago by londonflavido • 0 • written 7.8 years ago by Pietro ▴ 40

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2.2k

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RNA rna-seq science bioinformatics

updated 7.9 years ago by James W. MacDonald 68k • written 7.9 years ago by hrishi27n ▴ 20

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4.5k

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RNA limma rsem edgeR

updated 7.9 years ago by Gordon Smyth 52k • written 7.9 years ago by hrishi27n ▴ 20

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1.7k

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R bioconductor RNA mRNA RNA binding proteins

8.0 years ago Walter F. Baumann ▴ 10

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1.9k

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EdgeR deseq2 RNA differential expression

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by tyssowski • 0

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5.3k

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RNA rnaseq Covariate adjustment deseq

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by sjs0282 • 0

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1.5k

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rna normalization

10.4 years ago aristotele_m ▴ 40

39 results • Page 1 of 1

Recent ...

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Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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