Bioconductor R packages

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r packages centos7 bioclite libxml2

updated 7.2 years ago by Pariksheet Nanda ▴ 120 • written 7.2 years ago by kai.karius ▴ 10

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r packages somaticsignatures variantannotation

updated 8.3 years ago by Martin Morgan 25k • written 8.4 years ago by solo7773 ▴ 10

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897

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R annotation bioconductor r packages

8.4 years ago mcaulfield • 0

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bioconductor r packages installation

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by Sara ▴ 20

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website r packages importing

8.6 years ago george.carlisle • 0

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r packages submission

8.7 years ago Jurat Shahidin ▴ 80

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Bioconductor biocLite R packages oldversion

9.0 years ago svlachavas ▴ 830

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Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

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A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

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Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30