Bioconductor PrincipalComponent

Showing : PrincipalComponent • reset

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520

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DESeq2 PrincipalComponent prin DifferentialExpression

updated 9 months ago by Michael Love 42k • written 9 months ago by Shaimaa Gamal • 0

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593

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DEP PrincipalComponent PCA plot_pca

updated 19 months ago by Basti ▴ 780 • written 19 months ago by fuqichen1 • 0

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933

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PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization

20 months ago rcreswell01 • 0

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1.0k

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DESeq2 RNASeq PrincipalComponent pcaExplorer

written 23 months ago by James • 0

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1.1k

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PrincipalComponent DiffBind

updated 2.3 years ago by swbarnes2 ★ 1.4k • written 2.3 years ago by Lisa • 0

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1.0k

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DESeq2 DiffSeq PrincipalComponent rlog heatmaps

updated 3.7 years ago by Michael Love 42k • written 3.7 years ago by Fischer-philipp ▴ 30

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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