Showing : Pathview • reset
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226
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GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO KEGG gage pathview
6 months ago danalvoronov ▴ 10
0
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1
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402
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Help with identifying genes mapped to KEGG pathway using pathview
pathview
updated 7 months ago by ★ 4.1k • written 8 months ago by • 0
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4
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2.3k
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pathview error "negative length vectors are not allowed
pathview kegg KEGG
updated 5 weeks ago by • 0 • written 14 months ago by • 0
0
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0
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820
views
SSL connect error in e.g. pathview from R version 4 in Windows 10
pathview SSL curl
16 months ago Matthias • 0
1
vote
4
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1.5k
views
pathview - a species in KEGG pathway but not in 'korg'
pathview KEGG Oryza_sativa
17 months ago Jiyoung Lee • 0
1
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1
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1.9k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 19 months ago by ★ 4.1k • written 19 months ago by ▴ 10
0
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2
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1.7k
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pathview: Warning: Failed to download KEGG xml/png files, hsa04110 skipped!
pathview
19 months ago 덕윤 • 0
4
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3
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3.5k
views
only 0's may be mixed with negative subscripts
pathview
updated 20 months ago by ▴ 10 • written 7.9 years ago by ▴ 30
1
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3
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1.5k
views
Many NAs using TAIR IDs for plotting KEGG pathways using pathview
KEGG TAIR_IDs KEGGdzPathwaysGEO pathview
updated 23 months ago by 67k • written 23 months ago by • 0
4
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6
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4.5k
views
Pathview unable to download pathways
clusterProfiler KEGGgraph clusterpr KEGG pathview
updated 2.2 years ago by ★ 4.1k • written 2.4 years ago by ▴ 10
3
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13
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3.1k
views
pathview says my nonmodel species is unknown: "species invalid"
KEGGREST KEGG gage pathview
2.2 years ago • updated 21 months ago nute11a ▴ 10
0
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1
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1.0k
views
Pathview error Warning: Parsing ./mmu04928.xml file failed, please check the file!
KEGGgraph pathview
updated 2.4 years ago by ★ 4.1k • written 2.4 years ago by • 0
0
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1
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1.4k
views
Help with Pathview: No annotation package for a species, gene symbols not mapped!
annotation_package not_available_in_BioConductor pathview
updated 2.1 years ago by • 0 • written 2.7 years ago by • 0
2
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2
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1.2k
views
pathview returns incorrect mappings for yeast
org.Sc.sgd.db org.Sc pathview
2.8 years ago chase.mateusiak • 0
0
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3
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1.3k
views
pathview: unable to use option "out.suffix"
pathview
updated 3.4 years ago by ★ 1.6k • written 3.4 years ago by • 0
0
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2
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2.3k
views
Drawing custom KEGG pathways
pathview KEGG
3.5 years ago curiousmind007 ▴ 10
1
vote
2
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980
views
Pathview won't render some KEGG pathways
pathview
3.5 years ago Duncan • 0
1
vote
2
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1.9k
views
PATHVIEW incorrect values being plotted in output
pathview org.Hs.eg.db
3.6 years ago • updated 3.5 years ago Rodrigo • 0
44
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29
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12k
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.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db pathview
updated 3.6 years ago by ▴ 130 • written 3.6 years ago by ▴ 160
0
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1
reply
1.1k
views
News: SBGNview manuscript on bioRxiv now
pathway SBGNview Reactome pathview PANTHER
written 3.6 years ago by ★ 1.6k
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0
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1.1k
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
3.6 years ago • updated 3.5 years ago Luo Weijun ★ 1.6k
6
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5
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1.8k
views
KEGG analysis for plasmodium
KEGG gage gageData pathview
updated 3.7 years ago by ★ 1.6k • written 3.7 years ago by • 0
1
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1
reply
1.3k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
3.7 years ago Luo Weijun ★ 1.6k
1
vote
2
replies
1.3k
views
Can I create a gene set using GAGE?
gage pathview gageData
written 3.8 years ago by ▴ 40
0
votes
1
reply
1.0k
views
Change colors pathview
pathview
updated 3.9 years ago by ★ 1.6k • written 3.9 years ago by ▴ 30
0
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0
replies
1.0k
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
4.0 years ago • updated 3.6 years ago Luo Weijun ★ 1.6k
0
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0
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1.3k
views
Pathview: empty metabolic map
pathview
4.1 years ago landenshanie ▴ 40
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2
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1.5k
views
Hightlight genes/metabolites in Pathview and ReactomePA
pathview ReactomePA
updated 4.4 years ago by 67k • written 4.4 years ago by • 0
0
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0
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739
views
Pathview colors only matching ids?
pathview
4.4 years ago okna0215 ▴ 10
1
vote
0
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1.1k
views
Pathview : why are some genes not colored?
pathview rna-seq
4.4 years ago okna0215 ▴ 10
0
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1
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914
views
Argument map.symbol converting IDs even when its value is FALSE
pathview
updated 4.5 years ago by ★ 4.0k • written 5.7 years ago by • 0
0
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1
reply
850
views
Multiple samples in pathview with different colors
pathview multiple samples
updated 3.4 years ago by • 0 • written 4.8 years ago by • 0
0
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0
replies
1.1k
views
gage function problem in R
gage R kegg pathview
updated 4.8 years ago by 42k • written 4.8 years ago by • 0
4
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4
replies
2.2k
views
How I interpret this plot from pathview
pathview kegg r pathway
5.0 years ago AZ ▴ 30
0
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0
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1.2k
views
KEGG pathway analysis using gage/pathview non KEGG organism duplicate K IDs
gage pathview KEGG Gene enrichment analysis
5.1 years ago MimR • 0
0
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3
replies
1.5k
views
None of the genes or compounds mapped to the pathway!
pathview AnnotationDbi
updated 5.1 years ago by 42k • written 5.1 years ago by • 0
0
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0
replies
1.1k
views
Modifying a Pathview function which needs an internet connection so that it can work without an internet connection.
Pathview Gene Mapping KEGG
5.2 years ago omarrafiqued ▴ 50
0
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0
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809
views
pathview : kegg gene ID in the visualisation ?
pathview
5.3 years ago cedric.vmdl • 0
0
votes
2
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1.4k
views
Issue with xml files downloaded with `pathview()`
pathview kegg xml
updated 5.3 years ago by ★ 1.6k • written 5.3 years ago by ▴ 10
0
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2
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2.1k
views
pathview: object 'bods' not found
pathview
updated 5.3 years ago by ▴ 10 • written 6.2 years ago by • 0
0
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1
reply
959
views
Pathview won't colour even with matching IDs
pathview
5.7 years ago francesco.gualdrini • 0
0
votes
0
replies
907
views
Help with mapping Kegg hsa01100 using pathview
kegg pathway pathview
5.7 years ago Ahdee ▴ 50
0
votes
0
replies
1.1k
views
Pathview input error: non-numeric variable in data frame
pathview kegg pathways package
6.1 years ago anc.informatics • 0
1
vote
5
replies
3.3k
views
KEGG enrichment for non-model
kegg pathway analysis non-model gage pathview
updated 3.3 years ago by • 0 • written 6.3 years ago by ▴ 40
0
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4
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3.0k
views
pathview: Warning: Download of hsa04110 xml and png files failed!
pathview
6.4 years ago masamiwata • 0
1
vote
4
replies
1.7k
views
Pathview error: ran fine yesterday
pathview
updated 6.5 years ago by 25k • written 7.4 years ago by ▴ 10
0
votes
1
reply
1.9k
views
Pathview results interpretation
pathview interpretation
6.5 years ago Aurora ▴ 20
0
votes
2
replies
4.0k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 2.7 years ago by • 0 • written 6.7 years ago by • 0
0
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0
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1.4k
views
pathview and gage server connection issue
pathview gage pathway analysis kegg visualization
6.8 years ago Luo Weijun ★ 1.6k
1
vote
1
reply
1.6k
views
Highlight ECs by KEGG module
pathview KEGG
updated 7.0 years ago by ★ 1.6k • written 7.0 years ago by • 0
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Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
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@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k
That is the rows that did converge.
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