Bioconductor Parameters

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xcms adjustRtime parameters scantime error biocparallel error

5.2 years ago abrsoule ▴ 30

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1.3k

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MAST AIC calcuation Parameters single cell hurdle model

updated 8 months ago by rproendo ▴ 30 • written 5.8 years ago by mcalgaro93 • 0

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1.4k

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rtracklayer liftOver parameters minMatch

updated 6.6 years ago by Michael Lawrence ★ 11k • written 6.6 years ago by Nik dAK ▴ 10

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1.5k

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Volcano plot Parameters

updated 7.2 years ago by Gordon Smyth 51k • written 7.2 years ago by Sanches • 0

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1.2k

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lpsymphony R parameters control warm start

updated 8.5 years ago by Wolfgang Huber ★ 13k • written 8.5 years ago by chiel • 0

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

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Answer: Deseq2 res Function

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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