Bioconductor Parameters

Showing : Parameters • reset

votes

replies

2.4k

views

xcms adjustRtime parameters scantime error biocparallel error

5.3 years ago abrsoule ▴ 30

votes

1.3k

views

MAST AIC calcuation Parameters single cell hurdle model

updated 9 months ago by rproendo ▴ 30 • written 5.9 years ago by mcalgaro93 • 0

votes

1.4k

views

rtracklayer liftOver parameters minMatch

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by Nik dAK ▴ 10

votes

replies

1.5k

views

Volcano plot Parameters

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by Sanches • 0

votes

1.2k

views

lpsymphony R parameters control warm start

updated 8.6 years ago by Wolfgang Huber ★ 13k • written 8.6 years ago by chiel • 0

5 results • Page 1 of 1

Recent ...

Replies

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Votes

scater/scran with TPMs from Salmon - counts?

Awards • All