Bioconductor PRIDE

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PRIDE rpx PXDataset

updated 2.7 years ago by Laurent Gatto 1.6k • written 2.8 years ago by gianluigi.caltabiano • 0

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MSnbase Bioconductor PRIDE rpx PXDataset

updated 2.8 years ago by Laurent Gatto 1.6k • written 6.1 years ago by fgol ▴ 10

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MassSpectrometry PRIDE

updated 10.3 years ago by Laurent Gatto 1.6k • written 10.3 years ago by paulamirini2008 • 0

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Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Comment: batch effect removal for agilent microarray data by gaye.yilmaz • 0

Hello again, Can using inSilicoMerging handle this situation?

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Answer: normalizatino of dna methylation EPIC data

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