Bioconductor Outlier

Showing : Outlier • reset

votes

542

views

Outlier

updated 18 months ago by ATpoint ★ 4.4k • written 19 months ago by sanchita.bhattacharya • 0

votes

replies

1.5k

views

DESeq2 RNAseq outlier

updated 20 months ago by ATpoint ★ 4.4k • written 20 months ago by James • 0

vote

replies

2.2k

views

RNAseq DESeq2 outlier counts DE analysis

updated 4.4 years ago by Kevin Blighe ★ 4.0k • written 4.4 years ago by DcL-A • 0

vote

replies

872

views

deseq2 outlier normalization removal

updated 4.5 years ago by Michael Love 42k • written 4.5 years ago by knholm • 0

votes

replies

7.0k

views

deseq2 rnaseq PCA hierarchical clustering outlier

7.8 years ago wd ▴ 30

votes

replies

1.7k

views

rnaseq outlier statistics batch effect

updated 8.3 years ago by Gordon Smyth 51k • written 8.3 years ago by grastalt27 • 0

vote

1.4k

views

arrayQualityMetrics Microarray Outlier

updated 8.9 years ago by Wolfgang Huber ★ 13k • written 8.9 years ago by horcsct ▴ 10

vote

replies

4.7k

views

DESeq2 outlier RNASeq

updated 9.8 years ago by Michael Love 42k • written 9.8 years ago by kenneth.daily • 0

8 results • Page 1 of 1

Recent ...

Replies

Answer: Poor dispersion fit in DESeq2 by Michael Love 42k

The fit (red line) doesn't matter because you have so many samples. Note there is almost no shrinkage. Besides that you may be intereste…

Answer: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p by Michael Love 42k

I'd recommend actually meeting with a local statistician to work out the analysis plan, or someone familiar with linear models in R. I h…

Answer: DESeq2 design and contrasts with 2 drug-treated and one control group by Michael Love 42k

> Now I am interested in comparing the DE genes between the resistant and acute groups, but I am unsure how to account for DMSO in that com…

Answer: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat by Laurent Gatto 1.6k

Tthis happens because the sequence spectraVariable is expected to be an atomic vector or a List with elements of length 1, but it's not - s…

Comment: How should I run ssGSEA Hallmark Enrichment Analysis? by Ginny • 0

I think the other side of this question is that the non protein coding genes would be in the "background", they would influence the ranking…

Votes

Answer: ISO a solution to rank-order introns by transcript

Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c

Answer: addPatternDensity in 'qsea' takes too much time

Awards • All

Popular Question to Robert Castelo ★ 3.4k

Scholar to James W. MacDonald 67k