Bioconductor Outlier

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651

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Outlier

updated 2.0 years ago by ATpoint ★ 4.8k • written 2.1 years ago by sanchita.bhattacharya • 0

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1.8k

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DESeq2 RNAseq outlier

updated 2.2 years ago by ATpoint ★ 4.8k • written 2.2 years ago by James • 0

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2.5k

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RNAseq DESeq2 outlier counts DE analysis

updated 4.9 years ago by Kevin Blighe ★ 4.0k • written 4.9 years ago by DcL-A • 0

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1.0k

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deseq2 outlier normalization removal

updated 5.0 years ago by Michael Love 43k • written 5.1 years ago by knholm • 0

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7.8k

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deseq2 rnaseq PCA hierarchical clustering outlier

8.3 years ago wd ▴ 30

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1.8k

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rnaseq outlier statistics batch effect

updated 8.8 years ago by Gordon Smyth 52k • written 8.8 years ago by grastalt27 • 0

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1.6k

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arrayQualityMetrics Microarray Outlier

updated 9.4 years ago by Wolfgang Huber ★ 13k • written 9.4 years ago by horcsct ▴ 10

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4.9k

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DESeq2 outlier RNASeq

updated 10.3 years ago by Michael Love 43k • written 10.3 years ago by kenneth.daily • 0

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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