Bioconductor OrganismDb

Showing : OrganismDb • reset

votes

replies

1.9k

views

OrganismDb AnnotationForge

8 months ago Ozan • 0

votes

replies

2.0k

views

clusterProfiler OrganismDb

updated 15 months ago by Guido Hooiveld ★ 4.1k • written 15 months ago by Aastha Kapoor • 0

votes

replies

1.6k

views

AnnotationForge OrganismData OrganismDb

20 months ago abhisek001 • 0

vote

replies

1.4k

views

annotation organismdb

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by Guido Hooiveld ★ 4.1k

votes

replies

3.2k

views

annotationhub organismdb orgdb unsupported organisms

updated 9.1 years ago by Valerie Obenchain ★ 6.8k • written 9.1 years ago by Guido Hooiveld ★ 4.1k

votes

replies

3.2k

views

promoter granges refseq ucsc organismdb

updated 9.3 years ago by Robert Castelo ★ 3.4k • written 9.3 years ago by efoss ▴ 10

votes

replies

2.8k

views

GO OrganismDb ggbio GO OrganismDb ggbio

updated 10.2 years ago by dalloliogm ▴ 50 • written 10.5 years ago by Georg Otto ▴ 120

vote

replies

4.2k

views

annotationdbi annotation organismdb loadnamespace

10.3 years ago milorobertsmith • 0

votes

replies

1.5k

views

go annotation organismdb

updated 10.4 years ago by James W. MacDonald 68k • written 10.4 years ago by Guido Hooiveld ★ 4.1k

vote

replies

2.4k

views

organismdb annotationdbi annotationforge

updated 10.4 years ago by Marc Carlson ★ 7.2k • written 10.4 years ago by artur ▴ 80

votes

1.6k

views

Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 11.2 years ago by Matthias Lienhard ▴ 280 • written 11.2 years ago by Hervé Pagès 16k

votes

replies

2.2k

views

Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

11.2 years ago Hervé Pagès 16k

votes

replies

2.3k

views

GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

11.2 years ago Hervé Pagès 16k

13 results • Page 1 of 1

Recent ...

Replies

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…

Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0

Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …

Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0

As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

Awards • All

Popular Question to Matthew McCormack ▴ 180

Popular Question to James W. MacDonald 68k