Showing : OrgDb • reset
1
vote
8
replies
982
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb AnnotationForge
updated 3 months ago by 68k • written 9 months ago by • 0
2
votes
2
replies
899
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 9 months ago by 68k • written 9 months ago by • 0
2
votes
2
replies
901
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 10 months ago by ▴ 10
1
vote
3
replies
790
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 15 months ago by 68k • written 15 months ago by • 0
2
votes
4
replies
980
views
Need help generating BSgenome and orgdb
OrgDb BSgenome
15 months ago • updated 12 months ago mat149 ▴ 80
0
votes
0
replies
2.5k
views
Error: package or namespace load failed for 'AnnotationDbi' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
OrgDb
2.1 years ago hswdl • 0
1
vote
7
replies
2.0k
views
Adding geneID to list of gene locus IDs
cluster OrgDb clusterProfiler
written 2.2 years ago by • 0
0
votes
4
replies
2.1k
views
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
OrgDb
2.2 years ago hendrikwenneker • 0
1
vote
9
replies
2.2k
views
Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion OrgDb clusterProfiler
2.3 years ago MK • 0
0
votes
1
reply
907
views
Share Annotation Packages
OrgDb AnnotationDbi
updated 2.3 years ago by 4.1k • written 2.3 years ago by • 0
0
votes
1
reply
1.6k
views
Exporting org.*.*.db Gene Ontology annotations to excel sheet or txt
OrgDb RNASeq
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
7
replies
5.9k
views
how to create an OrgDb package?
orgDb annotationForge
updated 2.8 years ago by • 0 • written 3.3 years ago by ▴ 20
1
vote
2
replies
1.9k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb Bioconductor AnnotationHub clusterProfiler
updated 3.7 years ago by ★ 4.1k • written 3.7 years ago by • 0
0
votes
0
replies
1.1k
views
Adding to Pseudomonas aeruginosa PAO1 to OrgDb
OrgDb
3.8 years ago Thomas.H.Hampton • 0
2
votes
3
replies
2.2k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 4.0 years ago by 68k • written 4.0 years ago by ▴ 30
0
votes
2
replies
1.7k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 4.6 years ago by 68k • written 4.6 years ago by ★ 2.0k
3
votes
6
replies
2.9k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub OrgDb snapshotDate
updated 2.6 years ago by 4.1k • written 4.7 years ago by ★ 2.0k
0
votes
34
replies
9.9k
views
Error: installation of package org.Mm.eg.db had non-zero exit status
OrgDb
updated 4.8 years ago by • 0 • written 5.3 years ago by • 0
7
votes
44
replies
6.6k
views
OrgDB download failed via AnnotationHub
annotationhub orgdb
updated 5.6 years ago by 4.1k • written 5.6 years ago by ▴ 10
3
votes
6
replies
2.3k
views
How to create a customized OrgDb in order to perform kegga analysis?
limma kegga orgdb
updated 7.0 years ago by 52k • written 7.0 years ago by • 0
0
votes
1
reply
1.6k
views
News: OrgDbs in AnnotationHub
annotationhub orgdb News
7.2 years ago shepherl 4.1k
0
votes
0
replies
1.5k
views
News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
orgdb txdb bioconductor annotation annotationhub News
7.3 years ago shepherl 4.1k
0
votes
6
replies
1.9k
views
Why are important organisms missing from AnnotationHub. Example query(hub, "Zea")
orgdb annotationhub
7.5 years ago slbai01 • 0
0
votes
2
replies
2.3k
views
add annotation features to BSgenome or txdb package
bsgenome txdb annotation orgdb
7.6 years ago • updated 7.5 years ago Didi ▴ 10
1
vote
0
replies
1.4k
views
News: complete set of OrgDb packages have been added to AnnotationHub
bioconductor annotationhub orgdb News
7.7 years ago shepherl 4.1k
0
votes
4
replies
1.6k
views
Annotation Hub object no longer present
Orgdb
8.2 years ago anamabrantesc • 0
2
votes
12
replies
2.6k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation orgdb
9.0 years ago knishida ▴ 20
3
votes
13
replies
3.2k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub organismdb orgdb unsupported organisms
updated 9.0 years ago by ★ 6.8k • written 9.1 years ago by ★ 4.1k
0
votes
5
replies
2.1k
views
Why are important organisms missing from AnnotationHub() $rdataclass == "OrgDb"?
annotationhub orgdb
updated 9.2 years ago by ★ 6.8k • written 9.2 years ago by ▴ 10
0
votes
0
replies
1.4k
views
Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
11.7 years ago Chris Whelan ▴ 60
0
votes
6
replies
1.7k
views
Creating an OrganismDbi package with a few transcript annotations
OrgDb OrganismDbi OrgDb OrganismDbi
updated 11.7 years ago by 25k • written 11.7 years ago by ★ 11k
0
votes
1
reply
1.9k
views
problem creating own org.Ss.eg.db
Annotation GO Organism OrgDb Annotation GO Organism OrgDb
updated 12.9 years ago by ★ 4.1k • written 12.9 years ago by ★ 7.2k
32 results • Page 1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file by 81becky • 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0
how you did it pls explain
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
Awards • All
Teacher to Gordon Smyth 52k
Scholar to James W. MacDonald 68k
Popular Question to Sara ▴ 20
Scholar to Michael Love 43k
Popular Question to Malcolm Cook ★ 1.6k
Locations • All
WEHI, Melbourne, Australia, just now
India, 36 minutes ago
France, 1 hour ago
The city by the bay, 2 hours ago
United States, 2 hours ago
Traffic: 609 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6