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Noiseq
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 15 months ago by
ATpoint
★ 4.5k • written 15 months ago by
Rutuja
• 0
1
vote
1
reply
919
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
2.5 years ago • updated 2.4 years ago
Pratibha
▴ 10
0
votes
2
replies
1.1k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 3.9 years ago by
ATpoint
★ 4.5k • written 3.9 years ago by
Themis
• 0
3
votes
6
replies
2.0k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 2.8 years ago by
Michael Love
43k • written 4.2 years ago by
andreia
▴ 10
0
votes
1
reply
922
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 6 months ago by
baptiste.bidon
• 0 • written 5.3 years ago by
Arindam
▴ 80
0
votes
0
replies
795
views
NOISeq 'readData' not writing correctly
software error
NOISeq
5.4 years ago
jledmondson
• 0
0
votes
1
reply
1.0k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
5.5 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.1k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
6.6 years ago
Aurora
▴ 20
0
votes
0
replies
1.1k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
6.8 years ago
aokoro
• 0
0
votes
0
replies
1.8k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
7.2 years ago
Luiz
• 0
0
votes
3
replies
1.7k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 7.3 years ago by
James W. MacDonald
67k • written 7.3 years ago by
Mau
▴ 50
0
votes
5
replies
4.1k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.4k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
9.1 years ago
lina.faller
▴ 10
0
votes
0
replies
1.1k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
11.7 years ago
Guest User
★ 13k
0
votes
2
replies
2.9k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 12.1 years ago by
Dan Tenenbaum
★ 8.2k • written 12.1 years ago by
Guest User
★ 13k
0
votes
4
replies
2.2k
views
NOISeq installation error
NOISeq
NOISeq
updated 12.1 years ago by
Sean Davis
21k • written 12.1 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.2k
views
NOISeq-real input parameters
NOISeq
NOISeq
12.7 years ago
Guest User
★ 13k
17 results • Page
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Replies
Comment: Deseq2 res Function
by
James W. MacDonald
67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data
by
James W. MacDonald
67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Robert Castelo
★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Votes
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
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