Showing : Nanostring • reset
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Trying to use a NanoString expression set with batch effects to do GSVA
GSVA Normalization BatchEffect GSVAdata NanoString
2.3 years ago Zhijie • 0
0
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3
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3.0k
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[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
2
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3
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2.2k
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Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
NanoNormIter DifferentialExpression Housekeeping DESeq2 NanoString
updated 3.3 years ago by 43k • written 3.3 years ago by • 0
1
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5
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2.3k
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how to plot multiple RLEs on same plot?
plotRLE Nanostring RUVSeq DESEQ2
updated 8 months ago by ▴ 70 • written 3.9 years ago by ▴ 60
3
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6
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2.4k
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Why NanoStringDiff package so slow?
NanoStringDiff NanoString nCounter DE analysis
updated 18 months ago by • 0 • written 5.7 years ago by ▴ 50
0
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1
reply
2.1k
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Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 5.0 years ago by ▴ 20 • written 5.7 years ago by ▴ 30
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9
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2.0k
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DESeq2 with nanostring data
deseq2 nanostring
5.4 years ago acs1990 ▴ 10
0
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4
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1.3k
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Setting up contrasts with 'limma', patient data, small number of repeats
limma nanostring contrasts
updated 5.6 years ago by 52k • written 5.6 years ago by • 0
16
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40
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11k
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Can NanoString data be analyzed using DESeq2?
NanoString Differential Expressed Genes Analysis DESeq2
updated 3.3 years ago by ▴ 10 • written 5.8 years ago by ▴ 50
1
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1
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1.9k
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GSVA with NanoString nCounter data
GSVA Nanostring
6.8 years ago • updated 6.1 years ago SB • 0
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5
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1.6k
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NanoStringDiff analysis with confounding factors
differential gene expression nanostring confounding factors
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
1
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6
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2.5k
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How to access normalized data in the NanoStringDiff package?
nanostringdiff nanostring NanoStringDiff
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 170
9
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13
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6.7k
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DESeq2 on NanoString Data
deseq2 nanostring
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 170
1
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1
reply
1.3k
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DESeq2 confounding cartridge
deseq2 confounders nanostring rnaseq differential gene expression
updated 7.1 years ago by 43k • written 7.1 years ago by • 0
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0
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1.6k
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design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter
7.8 years ago c.kohler • 0
3
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8
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4.0k
views
Using DESeq2 with Nanostring data (for VST only)
deseq2 variancestabilizingtransformation nanostring
updated 8.1 years ago by 43k • written 8.1 years ago by ▴ 10
2
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0
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2.2k
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NanoString Data Normalization Revisited
nanostring normalization
9.6 years ago alakatos ▴ 130
24
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12
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13k
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Nanostring analysis with limma
nanostring limma
updated 10.0 years ago by ▴ 20 • written 10.0 years ago by ▴ 370
18 results • Page 1 of 1
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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2 by Tom • 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq by caroline.zanchi • 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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