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NanoStringDiff
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0
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1.8k
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
23 months ago
pg45863
▴ 10
0
votes
2
replies
1.6k
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
23 months ago
pg45863
▴ 10
0
votes
1
reply
953
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 2.2 years ago by
James W. MacDonald
68k • written 2.2 years ago by
Aleksandra
• 0
0
votes
2
replies
734
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 2.4 years ago by
James W. MacDonald
68k • written 2.4 years ago by
Paraskevi
• 0
0
votes
0
replies
797
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
3.4 years ago
sanrie10
• 0
5
votes
7
replies
2.1k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 3.6 years ago by
James W. MacDonald
68k • written 3.6 years ago by
reberya
• 0
3
votes
2
replies
1.3k
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
3.8 years ago
choijamts
• 0
3
votes
6
replies
2.4k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 18 months ago by
georgersmith
• 0 • written 5.7 years ago by
lim6432
▴ 50
0
votes
0
replies
873
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
4.1 years ago
YM
• 0
1
vote
1
reply
1.2k
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 4.5 years ago by
Laurent Gatto
1.6k • written 4.5 years ago by
Pedro
▴ 10
1
vote
7
replies
1.4k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
5.3 years ago
stephen.pollo
• 0
0
votes
2
replies
1.1k
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 5.7 years ago by
James W. MacDonald
68k • written 5.7 years ago by
Guillaume Robert
• 0
3
votes
3
replies
1.8k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 15 months ago by
pjanas
• 0 • written 6.0 years ago by
noelleenright
▴ 10
1
vote
6
replies
2.5k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
casey.rimland
▴ 170
0
votes
0
replies
1.6k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
7.8 years ago
c.kohler
• 0
15 results • Page
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Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2
by
ATpoint
★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness
by
ATpoint
★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Votes
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
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