Bioconductor NanoStringDiff

Showing : NanoStringDiff • reset

votes

replies

1.5k

views

NanoStringDiff clusterProfiler fgsea

19 months ago pg45863 ▴ 10

votes

replies

1.3k

views

DESeq2 NanoStringDiff limma

19 months ago pg45863 ▴ 10

votes

849

views

GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 22 months ago by James W. MacDonald 67k • written 22 months ago by Aleksandra • 0

votes

replies

678

views

NanoStringDiff

updated 2.0 years ago by James W. MacDonald 67k • written 2.0 years ago by Paraskevi • 0

votes

replies

724

views

DifferentialExpression NanoStringDiff

3.0 years ago sanrie10 • 0

votes

replies

1.9k

views

limma edgeR DESeq2 NanoStringDiff

updated 3.3 years ago by James W. MacDonald 67k • written 3.3 years ago by reberya • 0

votes

replies

1.2k

views

Nan NanoStringDiff

3.5 years ago choijamts • 0

votes

replies

2.2k

views

NanoStringDiff NanoString nCounter DE analysis

updated 13 months ago by georgersmith • 0 • written 5.4 years ago by lim6432 ▴ 50

votes

replies

819

views

NanoStringDiff

3.8 years ago YM • 0

vote

1.1k

views

Bioconductor Transcriptomics NanoStringDiff

updated 4.1 years ago by Laurent Gatto 1.6k • written 4.1 years ago by Pedro ▴ 10

vote

replies

1.3k

views

NanoStringDiff

4.9 years ago stephen.pollo • 0

votes

replies

1.1k

views

NanoStringDiff GLM Gene expression

updated 5.3 years ago by James W. MacDonald 67k • written 5.3 years ago by Guillaume Robert • 0

votes

replies

1.7k

views

NanoStringDiff

updated 11 months ago by pjanas • 0 • written 5.6 years ago by noelleenright ▴ 10

vote

replies

2.3k

views

nanostringdiff nanostring NanoStringDiff

updated 6.5 years ago by James W. MacDonald 67k • written 6.5 years ago by casey.rimland ▴ 170

votes

replies

1.5k

views

nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

7.4 years ago c.kohler • 0

15 results • Page 1 of 1

Recent ...

Replies

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

Awards • All