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NOISeq
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 20 months ago by
ATpoint
★ 4.8k • written 20 months ago by
Rutuja
• 0
1
vote
1
reply
1.0k
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
2.8 years ago
Pratibha
▴ 10
0
votes
2
replies
1.1k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 4.3 years ago by
ATpoint
★ 4.8k • written 4.3 years ago by
Themis
• 0
3
votes
6
replies
2.3k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 3.2 years ago by
Michael Love
43k • written 4.6 years ago by
andreia
▴ 10
0
votes
1
reply
1.0k
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 10 months ago by
baptiste.bidon
• 0 • written 5.6 years ago by
Arindam
▴ 80
0
votes
0
replies
858
views
NOISeq 'readData' not writing correctly
software error
NOISeq
5.8 years ago
jledmondson
• 0
0
votes
1
reply
1.1k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
5.8 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.2k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
7.0 years ago
Aurora
▴ 20
0
votes
0
replies
1.2k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
7.2 years ago
aokoro
• 0
0
votes
0
replies
1.9k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
7.6 years ago
Luiz
• 0
0
votes
3
replies
1.8k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 7.7 years ago by
James W. MacDonald
68k • written 7.7 years ago by
Mau
▴ 50
0
votes
5
replies
4.4k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.4k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
9.4 years ago
lina.faller
▴ 10
0
votes
0
replies
1.2k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
12.1 years ago
Guest User
★ 13k
0
votes
2
replies
3.0k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 12.5 years ago by
Dan Tenenbaum
★ 8.2k • written 12.5 years ago by
Guest User
★ 13k
0
votes
4
replies
2.3k
views
NOISeq installation error
NOISeq
NOISeq
updated 12.5 years ago by
Sean Davis
21k • written 12.5 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.3k
views
NOISeq-real input parameters
NOISeq
NOISeq
13.1 years ago
Guest User
★ 13k
17 results • Page
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Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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