Bioconductor NOISeq

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867

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NOISeq withoutreplicate Noiseq

updated 18 months ago by ATpoint ★ 4.6k • written 18 months ago by Rutuja • 0

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972

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RNAseq RNASeqData NOISeq

2.7 years ago • updated 2.6 years ago Pratibha ▴ 10

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1.1k

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DESeq2 NOISeq edgeR

updated 4.1 years ago by ATpoint ★ 4.6k • written 4.1 years ago by Themis • 0

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2.1k

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deseq2 noiseq lowcounts rnaseq

updated 3.0 years ago by Michael Love 43k • written 4.4 years ago by andreia ▴ 10

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965

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noiseq RNA-seq quality control

updated 8 months ago by baptiste.bidon • 0 • written 5.4 years ago by Arindam ▴ 80

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827

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software error NOISeq

5.6 years ago jledmondson • 0

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1.0k

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noiseq rsubread tophat bowtie bowtie2

5.6 years ago Marcelo Laia ▴ 450

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1.2k

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noiseq logfoldchange

6.8 years ago Aurora ▴ 20

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1.2k

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R noiseq data.frame

7.0 years ago aokoro • 0

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1.8k

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complexheatmap Rstudio NOISeq

7.4 years ago Luiz • 0

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1.7k

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rnaseq de analysis gene filtering noiseq

updated 7.5 years ago by James W. MacDonald 67k • written 7.5 years ago by Mau ▴ 50

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4.2k

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deseq2 cqn noiseq

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by glmazzo ▴ 10

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1.4k

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noiseq batch effect ARSyNseq

9.3 years ago lina.faller ▴ 10

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1.2k

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RNASeq NOISeq RNASeq NOISeq

11.9 years ago Guest User ★ 13k

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3.0k

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NOISeq NOISeq

updated 12.3 years ago by Dan Tenenbaum ★ 8.2k • written 12.3 years ago by Guest User ★ 13k

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2.3k

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NOISeq NOISeq

updated 12.3 years ago by Sean Davis 21k • written 12.3 years ago by Fatemehsadat Seyednasrollah ▴ 260

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1.3k

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NOISeq NOISeq

12.9 years ago Guest User ★ 13k

17 results • Page 1 of 1

Recent ...

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0