Showing : NCBI • reset
2
votes
3
replies
723
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
11 months ago R_Page • 0
4
votes
6
replies
1.6k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 5 weeks ago by • 0 • written 12 months ago by • 0
0
votes
0
replies
783
views
getGFFSet function CRASHES R session
getGFF NCBI biomartr biomaRt
3.2 years ago Matan G. ▴ 60
2
votes
4
replies
1.2k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 4.5 years ago by 67k • written 4.5 years ago by • 0
1
vote
5
replies
1.6k
views
Gene Ontology analysis
ontology edger limma ncbi organism package
updated 4.6 years ago by 51k • written 4.6 years ago by ▴ 20
0
votes
4
replies
2.4k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread ncbi GRCh38 hg38
updated 8.0 years ago by ★ 3.6k • written 8.0 years ago by • 0
0
votes
0
replies
1.6k
views
Search SRA based on BioSample Attributes
ncbi sra search
8.8 years ago massacomgrao • 0
8
votes
7
replies
3.9k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 8.8 years ago by 16k • written 8.8 years ago by ▴ 10
2
votes
2
replies
3.5k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray normalization ncbi
updated 9.5 years ago by 67k • written 9.5 years ago by ▴ 20
0
votes
1
reply
1.4k
views
.getNcbiURL returns old NCBI url ?
annotate ncbi url
9.9 years ago reuma • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2 by icecreamlover • 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
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Popular Question to Assa Yeroslaviz ★ 1.5k
Popular Question to Gordon Smyth 51k
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Popular Question to James W. MacDonald 67k
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