Bioconductor NCBI

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875

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Rstudio cDNA ensembldb NCBI

16 months ago R_Page • 0

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2.6k

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RStudio convert ensembldb NCBI

updated 6 months ago by MauriAndres • 0 • written 17 months ago by j_denton • 0

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860

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getGFF NCBI biomartr biomaRt

3.7 years ago Matan G. ▴ 60

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1.3k

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by chefer • 0

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1.8k

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ontology edger limma ncbi organism package

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by babak.loghmani ▴ 20

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2.6k

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rsubread ncbi GRCh38 hg38

updated 8.4 years ago by Wei Shi ★ 3.6k • written 8.5 years ago by jan.soderman • 0

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1.7k

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ncbi sra search

9.2 years ago massacomgrao • 0

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4.2k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by gokcen.eraslan ▴ 10

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3.8k

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microarray normalization ncbi

updated 9.9 years ago by James W. MacDonald 68k • written 9.9 years ago by pankajnarula84 ▴ 20

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1.5k

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annotate ncbi url

10.3 years ago reuma • 0

10 results • Page 1 of 1

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Answer: WGCNA by ATpoint ★ 4.8k

> I would like to ask whether it would make sense to first normalize the count data using DESeq2 and VST before performing WGCNA. This …

Answer: cannot download atena annotation for human by Robert Castelo ★ 3.4k

Hi, sorry for the delay in getting back to you, probably by now you found the solution yourself, but just in case you didn't or anybody els…

Answer: Comparison of results obtained from a subset of the data versus the complete dat by swbarnes2 ★ 1.4k

In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.

Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Answer: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

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Answer: Origin of the labels for the SingleCellMultiModal dataset

Answer: PhD scholar

Answer: how to use `arrayWeightsQuick()`?

Having Trouble Using CNE12() and CNE21() in CNEr

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Scholar to ATpoint ★ 4.8k