Showing : NCBI • reset
2
votes
3
replies
841
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
15 months ago R_Page • 0
4
votes
6
replies
2.4k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 5 months ago by • 0 • written 16 months ago by • 0
0
votes
0
replies
853
views
getGFFSet function CRASHES R session
getGFF NCBI biomartr biomaRt
3.6 years ago Matan G. ▴ 60
2
votes
4
replies
1.3k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
1
vote
5
replies
1.7k
views
Gene Ontology analysis
ontology edger limma ncbi organism package
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 20
0
votes
4
replies
2.6k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread ncbi GRCh38 hg38
updated 8.4 years ago by ★ 3.6k • written 8.4 years ago by • 0
0
votes
0
replies
1.6k
views
Search SRA based on BioSample Attributes
ncbi sra search
9.1 years ago massacomgrao • 0
8
votes
7
replies
4.1k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 9.1 years ago by 16k • written 9.2 years ago by ▴ 10
2
votes
2
replies
3.7k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray normalization ncbi
updated 9.8 years ago by 68k • written 9.8 years ago by ▴ 20
0
votes
1
reply
1.5k
views
.getNcbiURL returns old NCBI url ?
annotate ncbi url
10.2 years ago reuma • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by AB ▴ 110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac by DENG • 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table by shepherl 4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by shepherl 4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file by shocked.tick.zyet • 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Votes
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
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