Showing : NCBI • reset
2
votes
3
replies
737
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
11 months ago R_Page • 0
4
votes
6
replies
1.7k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 7 weeks ago by • 0 • written 12 months ago by • 0
0
votes
0
replies
792
views
getGFFSet function CRASHES R session
getGFF NCBI biomartr biomaRt
3.3 years ago Matan G. ▴ 60
2
votes
4
replies
1.2k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 4.5 years ago by 67k • written 4.5 years ago by • 0
1
vote
5
replies
1.6k
views
Gene Ontology analysis
ontology edger limma ncbi organism package
updated 4.7 years ago by 51k • written 4.7 years ago by ▴ 20
0
votes
4
replies
2.5k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread ncbi GRCh38 hg38
updated 8.1 years ago by ★ 3.6k • written 8.1 years ago by • 0
0
votes
0
replies
1.6k
views
Search SRA based on BioSample Attributes
ncbi sra search
8.8 years ago massacomgrao • 0
8
votes
7
replies
3.9k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 8.8 years ago by 16k • written 8.8 years ago by ▴ 10
2
votes
2
replies
3.5k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray normalization ncbi
updated 9.5 years ago by 67k • written 9.5 years ago by ▴ 20
0
votes
1
reply
1.4k
views
.getNcbiURL returns old NCBI url ?
annotate ncbi url
9.9 years ago reuma • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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