Bioconductor MultipleComparison

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488

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limmaGUI lim MultipleComparison multip

updated 12 months ago by Gordon Smyth 52k • written 12 months ago by roger.moreno.justicia • 0

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931

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Linnorm DEG MultipleComparison

updated 16 months ago by shunyip • 0 • written 3.6 years ago by awakumaya • 0

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1.2k

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Proteomics proDA MultipleComparison

18 months ago t.b.n.nguyen-9 • 0

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1.2k

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MultipleComparison DESeq2 Genetics contrasts RNASeq

updated 19 months ago by James W. MacDonald 68k • written 19 months ago by a26fd14e • 0

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914

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DESeq2 MultipleComparison r

updated 2.2 years ago by Michael Love 43k • written 2.2 years ago by ncorak • 0

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701

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MultipleComparison DESeq2

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by Joshua • 0

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2.8k

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MultipleComparison edgeR DESeq2

written 2.9 years ago by yuet • 0

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949

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factor DESeq2 MultipleComparison

updated 3.3 years ago by swbarnes2 ★ 1.4k • written 3.3 years ago by diegocastano182 • 0

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1.2k

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GeneExpression R limma MultipleComparison

updated 4.2 years ago by James W. MacDonald 68k • written 4.2 years ago by Gwénolé • 0

9 results • Page 1 of 1

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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…

Answer: cameraPR() non directional test by Gordon Smyth 52k

Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …

Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

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Answer: limma::voom vs edgeR::voomLmFit - when to use?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: Plot title for PCA in DESeq2

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