Bioconductor Multiple sequence alignment

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MSA R Multiple sequence alignment consensus sequence

updated 5.7 years ago by ulrich.bodenhofer ▴ 20 • written 5.7 years ago by Yuchen Chang • 0

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snp multiple sequence alignment fasta Tutorial

updated 6.2 years ago by Martin Morgan 25k • written 6.2 years ago by pltbiotech_tkarthi • 0

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msa msaprettyprint() multiple sequence alignment

7.9 years ago map2085 ▴ 40

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

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scater/scran with TPMs from Salmon - counts?

Answer: enrichGOgradient color change

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