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Showing :
Mfuzz
•
reset
3
votes
6
replies
1.2k
views
Average biological replicates in RNA-seq
Mfuzz
RNASeq
10 months ago
boczniak767
▴ 740
0
votes
0
replies
527
views
Mfuzz package loading issues
Mfuzz
MacBook
loadingissues
13 months ago
Jon
• 0
0
votes
4
replies
1.0k
views
Mfuzz package loading issues
Mfuzz
loadingissues
macbook
13 months ago
Jon
• 0
0
votes
2
replies
1.0k
views
R: problem with running time-series analysis software: Mfuzz
time-series
mfuzz
replace=FALSE
2.6 years ago
soda
▴ 80
1
vote
1
reply
700
views
Fuzzy C means clustering
Mfuzz
updated 4.1 years ago by
James W. MacDonald
67k • written 4.1 years ago by
syed.imtiazaziz
• 0
0
votes
0
replies
797
views
Mfuzz time-series design
mfuzz
normalization
5.5 years ago
xizhang
• 0
3
votes
9
replies
2.9k
views
DESeq2 Normalized Counts for Mfuzz
deseq2
rnaseq
mfuzz
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
rbenel
▴ 40
0
votes
0
replies
1.1k
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
6.5 years ago
prakashpandey1111
• 0
0
votes
0
replies
770
views
For optimal c and m using fuzzy c-means clustering
mfuzz
6.5 years ago
prakashpandey1111
• 0
1
vote
1
reply
1.5k
views
expression profiles between DESeq2 and Mfuzz
deseq2
mfuzz
differential expression
timecourse
updated 8.2 years ago by
Michael Love
43k • written 8.2 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
2.3k
views
cluster composition in Mfuzz package
cluster
mfuzz
gene names
updated 8.7 years ago by
Assa Yeroslaviz
★ 1.5k • written 8.7 years ago by
thomas.dobrenel
• 0
1
vote
1
reply
5.7k
views
Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz
clustering
bioinformatics
proteomics
timecourse
updated 8.8 years ago by
Laurent Gatto
1.6k • written 8.8 years ago by
under-waterworld
• 0
0
votes
0
replies
1.2k
views
Small bug in mfuzz.plot
Mfuzz
8.9 years ago
musically.ut
• 0
0
votes
0
replies
1.6k
views
mfuzz problems
Clustering
Mfuzz
Clustering
Mfuzz
10.6 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
1.2k
views
[Mfuzz] y-axis values
Clustering
Mfuzz
Clustering
Mfuzz
13.7 years ago
boczniak767
▴ 740
0
votes
3
replies
4.2k
views
[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz
Mfuzz
updated 7 months ago by
Caio
• 0 • written 13.7 years ago by
boczniak767
▴ 740
0
votes
1
reply
1.7k
views
Mfuzz plot -pdf
Mfuzz
Mfuzz
updated 15.7 years ago by
James W. MacDonald
67k • written 15.7 years ago by
dorothyc
▴ 140
0
votes
1
reply
1.5k
views
Mfuzz package
Clustering
Mfuzz
Clustering
Mfuzz
updated 15.7 years ago by
James W. MacDonald
67k • written 15.7 years ago by
dorothyc
▴ 140
0
votes
4
replies
6.4k
views
Heatmap without using clustering result
Clustering
Mfuzz
Clustering
Mfuzz
updated 15.8 years ago by
Steve Pederson
▴ 60 • written 15.8 years ago by
gregory voisin
▴ 430
19 results • Page
1 of 1
Recent ...
Replies
Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
by
Gordon Smyth
52k
Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…
Comment: Error in get_anno_data(ontology) : ontology not supported yet...
by
GODseeker
• 0
thank u so much ,god bless u,my dear friend.
Comment: Feature Counts - potential bug with outfile.jcounts
by
chris2.a.white
• 0
Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
xiaofeiwang198266
• 0
Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …
Answer: Error in get_anno_data(ontology) : ontology not supported yet...
by
Guido Hooiveld
★ 4.1k
Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…
Votes
A: Advice on correcting for batch effect using DESeq2
Comment: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Comment: Can we get beta values with DMRcate package
Answer: Can we get beta values with DMRcate package
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martin.grigorov
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James W. MacDonald
67k
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