Bioconductor MAplot

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1.5k

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DESeq2 MAplot

updated 23 months ago by ATpoint ★ 4.6k • written 23 months ago by Michael • 0

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2.8k

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MAplot

24 months ago Nathalie ▴ 20

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3.2k

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DESeq2 MAplot deseq

updated 3.9 years ago by Michael Love 43k • written 3.9 years ago by sp • 0

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967

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deseq2 MAplot lfcshrink

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by evelas13 • 0

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754

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deseq2 maplot annotation

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by rbronste ▴ 60

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3.2k

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diffbind R MAplot Chipseq

updated 5.6 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by melnuesch ▴ 10

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1.6k

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deseq2 MAplot

6.2 years ago avitalwasser • 0

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1.5k

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deseq2 maplot

updated 6.2 years ago by James W. MacDonald 67k • written 6.2 years ago by rbronste ▴ 60

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1.3k

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deseq2 normalization maplot rnaseq

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by ma619 • 0

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1.7k

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MAPLOT DESEQ2 RNASEQ

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by phurbusang • 0

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2.4k

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deseq2 maplot subset

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by rbronste ▴ 60

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1.9k

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diffbind maplot

updated 7.0 years ago by Rory Stark ★ 5.2k • written 7.0 years ago by grundelphine • 0

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1.5k

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diffbind deseq2 maplot

updated 7.3 years ago by Rory Stark ★ 5.2k • written 7.3 years ago by rbronste ▴ 60

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2.9k

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deseq2 maplot

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by jshouse ▴ 10

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2.1k

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edgeR MAplot rnaseq differential gene expression

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by joseph.bergenstrahle • 0

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1.4k

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MAplot rnaseq cummerbund

8.8 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by Amora • 0

You did a great job giving an overview.....[slope][1] better than the bioconductor group! [1]: https://slopeio.org

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 750

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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