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Lumi
•
reset
0
votes
2
replies
2.8k
views
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’
RSQLite
lumi
3.9 years ago
Rohmatul
• 0
6
votes
3
replies
1.6k
views
GEOquery: preprocessing log of imported data
GEOquery
microarray
lumi
affy
limma
updated 4.3 years ago by
Sean Davis
21k • written 4.3 years ago by
fabian
▴ 40
2
votes
1
reply
1.2k
views
lumi: Importing Methylation EPIC IDAT files
lumi
EPIC
Methylation
4.4 years ago
Zach Roe
▴ 10
0
votes
0
replies
1.1k
views
lumi / RSQLite warning
lumi
4.6 years ago
stewart999
▴ 10
1
vote
4
replies
1.9k
views
download data from GEO Illumina platform
lumi
illumina human ht-12 v4
updated 5.8 years ago by
lhuang7
▴ 50 • written 5.8 years ago by
kankejia0703
• 0
1
vote
2
replies
1.6k
views
lumi package fails to load because of a missing dependency (bumphunter)
lumi
methylumi
updated 5.9 years ago by
lhuang7
▴ 50 • written 5.9 years ago by
kaur.alasoo
▴ 30
1
vote
4
replies
2.0k
views
Trouble loading 'lumi' package
lumi
illumina
hdf5array
updated 6.1 years ago by
James W. MacDonald
67k • written 6.1 years ago by
Alexander Azarian
▴ 30
2
votes
5
replies
2.6k
views
Errors in Processing GSE36411_non-normalized.txt file of Illumina data using lumi Package and limma package
limma
lumi
illumina
gene expression data
updated 2.8 years ago by
mohammedtoufiq91
▴ 10 • written 6.3 years ago by
Harpreet Kaur
• 0
0
votes
1
reply
1.4k
views
Analysing microarray raw data: GSEXXXX_non-normalized.txt
lumi
microarray
GSE
updated 6.7 years ago by
Gordon Smyth
51k • written 6.7 years ago by
mkd12
• 0
2
votes
4
replies
2.9k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi
methylumi
methyAnalysis
6.7 years ago
topijush
▴ 10
1
vote
3
replies
2.6k
views
Reading Illumina HT12 V4.0 Data from GEO into Lumi
lumi
geoquery
geo
illumina human ht-12 v4
gene expression
updated 7.0 years ago by
Gordon Smyth
51k • written 7.0 years ago by
aaronrosenstein
• 0
0
votes
1
reply
1.3k
views
Add gene information to most expressed gene list (packages lumi and GOstats)
annotation
lumi
GOstats
updated 7.0 years ago by
James W. MacDonald
67k • written 7.0 years ago by
marongiu.luigi
• 0
0
votes
0
replies
1.4k
views
Can't get the lumi and methylumi packages to work.
lumi
methylumi
7.4 years ago
gitteba
• 0
0
votes
0
replies
2.6k
views
lumiR error Error in gregexpr("\t", dataLine1)[[1]] : subscript out of bounds
lumi
illumina
normalization
beadarray
7.4 years ago
hkarakurt
▴ 20
1
vote
10
replies
3.3k
views
minfi, lumi, methylumi, DMRcate installation error
minfi
lumi
methylumi
dmrcate
illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.5 years ago by
Tim Peters
▴ 200 • written 7.6 years ago by
poojitha.stemcell
▴ 10
2
votes
1
reply
1.6k
views
Differential Expression Analysis
differential gene expression
microarray
lumi
illumina
updated 7.6 years ago by
James W. MacDonald
67k • written 7.6 years ago by
paul.elliot1994
• 0
1
vote
6
replies
2.1k
views
minfi and lumi not available for version 3.3.2
minfi
lumi
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
Jessie.Johnson
▴ 10
0
votes
1
reply
1.5k
views
Problems in using lumi for importing illumina raw data
beadarray
lumi
normalization
microarray
illumina
updated 7.8 years ago by
Gordon Smyth
51k • written 7.8 years ago by
Biologist
▴ 120
4
votes
5
replies
2.0k
views
Can't install 'lumi'
lumi
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
stewart999
▴ 10
0
votes
1
reply
1.3k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip
Annotation
Mouse
Lumi
probeID2nuID
updated 8.2 years ago by
Andy Lynch
▴ 120 • written 8.2 years ago by
smt8n
• 0
0
votes
2
replies
1.4k
views
lumi: how to get number of beads information?
lumi
minfi
updated 8.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.3 years ago by
krishna312
• 0
0
votes
0
replies
1.1k
views
Lumi Control Data
lumi
illumina
microarray
8.4 years ago
m.a.bentley
• 0
0
votes
1
reply
1.2k
views
Lumi error in importMethylIDAT
lumi
methylation
illumina
updated 8.4 years ago by
James W. MacDonald
67k • written 8.4 years ago by
rasii
• 0
1
vote
2
replies
2.2k
views
Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma
lumi
illuminaio
illimina 450k methylation
microarray
8.5 years ago
Adam
• 0
2
votes
4
replies
1.7k
views
read bead-level data directly by lumi
bead-level
GEO
lumi
updated 8.6 years ago by
Mike Smith
★ 6.5k • written 8.6 years ago by
gnilihzeux
• 0
1
vote
2
replies
1.5k
views
readIllumina couln't read bead-level txt file from GEO raw data
beadarray
bead-level
GEO
lumi
updated 8.6 years ago by
Mike Smith
★ 6.5k • written 8.6 years ago by
gnilihzeux
• 0
1
vote
2
replies
2.3k
views
unable to find Lumi package in R
lumi
updated 8.6 years ago by
Steve Lianoglou
★ 13k • written 8.6 years ago by
nayeli0126
• 0
0
votes
4
replies
3.0k
views
Illumina ID Mapping library
lumi
illumina beadarray
microarray
8.7 years ago
kritikamish99
▴ 10
0
votes
2
replies
1.5k
views
Ilumina microarray gene expression
microarray
lumi
updated 8.7 years ago by
James W. MacDonald
67k • written 8.7 years ago by
kritikamish99
▴ 10
3
votes
12
replies
6.6k
views
packages installation problem
limma
Rqc
beadarray
Lumi
updated 8.7 years ago by
Welliton de Souza
▴ 70 • written 8.7 years ago by
raya.girish
• 0
0
votes
1
reply
1.6k
views
Lumi, HT-12 chip, and number of bead replicates
lumi
updated 8.7 years ago by
Gordon Smyth
51k • written 14.7 years ago by
Christina Markunas
▴ 20
0
votes
0
replies
1.3k
views
Question about lumiT warning message
lumi
8.8 years ago
clevy
▴ 10
0
votes
0
replies
1.0k
views
"Error: object 'nuID' not found" error when using `returnAllMatches=TRUE` in `IlluminaID2nuID()`
lumi
lumihumanidmapping
8.9 years ago
aush
▴ 40
0
votes
0
replies
1.1k
views
no chip information in lumiHumanIDMapping?
lumi
lumihumanidmapping
8.9 years ago
aush
▴ 40
0
votes
0
replies
1.8k
views
Error in the Illumina ID to Gene Symbol mapping through lumi package
lumi
illuminahumanv3
lumihumanidmapping
9.2 years ago
gokcen.eraslan
▴ 10
2
votes
2
replies
2.1k
views
Lumi - Can't write to pData Slot
lumi
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
andrew.j.skelton73
▴ 370
2
votes
8
replies
3.8k
views
Problems importing Illumina raw data with lumi R package
Illumina Human HT-12 v4
lumi
limma
microarray
updated 9.4 years ago by
Gordon Smyth
51k • written 9.4 years ago by
svlachavas
▴ 830
2
votes
20
replies
11k
views
problem loading lumi package, Error : object ‘sqliteQuickSQL’ is not exported by 'namespace:RSQLite'
lumi
updated 9.4 years ago by
laseaman
• 0 • written 9.9 years ago by
lucashusquin
▴ 10
1
vote
3
replies
2.0k
views
lumiR.batch fails after upgrade to R v3.2.0 and lumi v2.20.0
lumi
9.5 years ago
Jeremy Martinson
• 0
2
votes
7
replies
2.9k
views
Removing samples from S4 object (in lumi)
lumi
S4
9.6 years ago
Chi Hong
• 0
0
votes
1
reply
1.8k
views
Adding Phenodata after processing in Lumi
PROcess
lumi
PROcess
lumi
updated 9.6 years ago by
Chi Hong
• 0 • written 13.2 years ago by
Marino, Rebecca Bosko
▴ 10
0
votes
1
reply
1.3k
views
lumi: can't see sample corr pairwise and MAplot plots
lumi
plot
updated 9.7 years ago by
Gordon Smyth
51k • written 9.7 years ago by
Frederico Moraes Ferreira
▴ 100
1
vote
1
reply
1.9k
views
Coercion of MethyLumiSet to MethyLumiR changes raw methylation values?
Normalization
probe
lumi
Normalization
probe
lumi
updated 9.7 years ago by
dsweeney
• 0 • written 10.6 years ago by
Nick Fishbane
▴ 20
0
votes
2
replies
1.6k
views
lumiHumanIDMapping/lumiHumanAll for R-3.1.2
lumi
lumiHumanIDMapping
lumiHumanAll
9.7 years ago
Frederico Moraes Ferreira
▴ 100
0
votes
1
reply
1.0k
views
Issues with lumi package
lumi
9.9 years ago
Sylvain Foisy
▴ 80
0
votes
1
reply
1.9k
views
how to set up sampleInfo for methylation array in illumina 450K
lumi
lumi
updated 10.4 years ago by
Pan Du
▴ 440 • written 10.4 years ago by
Guest User
★ 13k
0
votes
5
replies
2.1k
views
Coercion lumi/minfi objects
lumi
minfi
lumi
minfi
updated 10.6 years ago by
Tim Triche
★ 4.2k • written 10.7 years ago by
Aileen Bahl
▴ 10
0
votes
0
replies
1.6k
views
EximiR - Limma - miRCURY LNA - Exiqon
miRNA
Microarray
Cancer
limma
lumi
ExiMiR
miRNA
Microarray
Cancer
limma
lumi
ExiMiR
10.7 years ago
Paolo Kunderfranco
▴ 350
0
votes
0
replies
1.9k
views
Illumina Expression analysis from iDAT files
Normalization
limma
beadarray
lumi
illuminaio
Normalization
limma
beadarray
lumi
10.8 years ago
Kasper Daniel Hansen
★ 6.5k
3
votes
9
replies
6.1k
views
Illumina Expression analysis from iDAT files
beadarray
lumi
illuminaio
idat
updated 2.8 years ago by
Gordon Smyth
51k • written 10.9 years ago by
Sean Davis
21k
50 results • Page
1 of 1
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…
Answer: heatmap with batch effect
by
James W. MacDonald
67k
You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …
Answer: how do I convert an Ilumn IDREF to a CPG loci
by
James W. MacDonald
67k
``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…
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Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…
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Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
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