Showing : Lipidomics • reset
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DESeq use in lipidomic analysis
DESeq2 package Lipidomics
updated 29 days ago by 43k • written 4 weeks ago by • 0
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Lipidomics Barplot: raw values or non-log, lipidr-normalized values?
Normalization Lipidomics lipidr
4 months ago David R ▴ 90
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2.2k
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Normalization of metabolomics/lipidomics data for limma
Lipidomics Metabolomics limma Normalization
3.8 years ago pgugger ▴ 70
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when to use filter_by_cv() function from the lipidr package
Lipidomics lipidr lipi
4.4 years ago eme • 0
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1.1k
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Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics lipidomics clinical research data integration biostatistics Job
5.2 years ago Tommi Suvitaival ▴ 10
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Shotgun lipidomics analysis
shotgun lipidomics lipidomics mass spectrometry
9.2 years ago Titan • 0
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3
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2.8k
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XCMS2 on MSMS data
xcms metabolomics massspectrometry lipidomics bioconductor
9.2 years ago Titan • 0
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3
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2.5k
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Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
9.2 years ago Titan • 0
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4
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3.3k
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XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
9.2 years ago Titan • 0
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1.5k
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Bioinformatics position available in lipidomics biomarker research
Lipidomics Lipidomics
15.4 years ago Michael Eiden ▴ 10
10 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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