Showing : LIMMA • reset
1
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4
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483
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Using both voom and removeBatchEffect, will they double adjust the data or is it the right way to perform this
limma adjustment voom removeBatchEffect covariates
7 days ago • updated 6 days ago sukeshinik5 • 0
0
votes
1
reply
92
views
Deseq2 design matrix
DESeq2 Designmatrix limma
updated 6 days ago by 66k • written 7 days ago by • 0
2
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3
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171
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Warning message when running limma with covariates
limma
updated 7 days ago by 51k • written 8 days ago by ▴ 20
0
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3
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820
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limma comparison for small sample size and how to get covariance matrix
covariancematrix limma
updated 1 day ago by 51k • written 9 days ago by • 0
5
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4
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233
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Limma with covariates
limma
10 days ago • updated 9 days ago Chris ▴ 20
3
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13
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757
views
Limma model.matrix design with batch effect and different life stages proportion estimates
DeconRNASeq limma
updated 17 days ago by • 0 • written 22 days ago by • 0
2
votes
2
replies
248
views
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools limma ExpressionData RNASeq edgeR
5 weeks ago mohammedtoufiq91 ▴ 10
1
vote
2
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206
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Subsetting RNAseq data | voomaByGroup()
limma
6 weeks ago Anna • 0
1
vote
2
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366
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Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq duplicateCorrelation limma voom
7 weeks ago Dylan.Sheerin • 0
2
votes
2
replies
364
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
7 weeks ago zzrammal • 0
3
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10
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675
views
Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 7 weeks ago by 66k • written 7 weeks ago by • 0
3
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2
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535
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limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 4 weeks ago by 51k • written 8 weeks ago by • 0
0
votes
1
reply
203
views
Gene-by-sample covariates in limma
Metabolomics limma
updated 8 weeks ago by 51k • written 8 weeks ago by • 0
3
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4
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332
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Help with error using camera() in limma
CAMERA limma
8 weeks ago Chris ▴ 20
0
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3
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327
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Assist me in determining whether the analysis process using the limma package has been executed correctly.
GEOquery ArrayExpress limma DifferentialExpression
updated 8 weeks ago by 66k • written 9 weeks ago by • 0
0
votes
2
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254
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limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 9 weeks ago by • 0
0
votes
2
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314
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RNAseq:Technical replicates from different batches
technicalReplicates BatchEffect limma RNASeq
10 weeks ago catv • 0
15
votes
17
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1.5k
views
Why p value inconsistent when using different number of pathway score?
limma
10 weeks ago • updated 8 weeks ago Chris ▴ 20
5
votes
3
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416
views
Log-cpm values from limma
limma edgeR RNASeq
updated 7 weeks ago by 51k • written 10 weeks ago by • 0
0
votes
7
replies
520
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
10 weeks ago • updated 9 weeks ago hortense96 • 0
1
vote
3
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436
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 11 weeks ago by 51k • written 11 weeks ago by • 0
5
votes
9
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1.1k
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
11 weeks ago • updated 10 weeks ago Chris ▴ 20
2
votes
6
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732
views
How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
11 weeks ago Chris ▴ 20
0
votes
1
reply
222
views
Limma design matrix only showing 3/4 treatments?
limma designmatrix
updated 12 weeks ago by 51k • written 12 weeks ago by • 0
0
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4
replies
391
views
Help with design.matrix
limma
12 weeks ago andrea.rodriguez-martinez13 • 0
1
vote
4
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512
views
Using a change in a continuous explanatory variable to test changes in gene expression with limma
limma
updated 12 weeks ago by 51k • written 12 weeks ago by • 0
0
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2
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269
views
voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
Voom Limma WGCNA
12 weeks ago Gimena • 0
15
votes
23
replies
2.3k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
3 months ago • updated 8 weeks ago Chris ▴ 20
2
votes
8
replies
633
views
Microarray Limma Model fitting and DEG
limma DGEanalysis
updated 3 months ago by 51k • written 3 months ago by • 0
5
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25
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1.2k
views
limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 12 weeks ago by 51k • written 3 months ago by ▴ 10
7
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6
replies
558
views
Batch Effect Correction, Gene Filtering
DGE limma
updated 3 months ago by 51k • written 3 months ago by • 0
0
votes
1
reply
311
views
Using splicing junction counts with edgeR/limma-voom
splicing limma edgeR
updated 3 months ago by 51k • written 3 months ago by • 0
0
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4
replies
473
views
Unable to annotate ExpressionSet object from hugene11st chip
oligo limma hugene11stprobeset.db AffymetrixChip
3 months ago Efra • 0
5
votes
7
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579
views
DEG Filtering
MicroarrayData limma Genefiltering
updated 3 months ago by 51k • written 3 months ago by • 0
2
votes
2
replies
336
views
Question about extracting co-efficients for pairwise comparisons in edgeR
limma fit design RNASeq edgeR
3 months ago Sabiha ▴ 20
0
votes
2
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450
views
RNA sequencing raw counts gene filtering
DESeq2 limma RNAseq
3 months ago kcarey • 0
1
vote
3
replies
506
views
Cross-species analysis - how to compute the mid parent value?
DESeq2 limma edgeR DifferentialExpression
written 5 months ago by • 0
2
votes
6
replies
679
views
limma: vooma mean-variance trend and data filtration
MicroarrayData limma
3 months ago Lily Cheang ▴ 10
3
votes
8
replies
629
views
Constrast for Time Course Experiments using Limma
limma
3 months ago dl17032000 • 0
8
votes
6
replies
589
views
DGE analysis with LIMMA
limma
updated 4 months ago by 51k • written 4 months ago by • 0
0
votes
0
replies
213
views
Can I combine collinear variables into a single value
BatchEffect limma
4 months ago Harrsha • 0
0
votes
3
replies
381
views
Differential enrichment analysis
limma Differentialenrichmentanalysis DEP
updated 3 months ago by 51k • written 4 months ago by • 0
0
votes
4
replies
398
views
Interactions in batches of varying size with different number of replicates using limma
limma RNASeq DifferentialExpression
4 months ago mperalc • 0
3
votes
5
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742
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 3 months ago by 42k • written 4 months ago by ▴ 10
2
votes
1
reply
329
views
Limma Question
DESeq2 BatchEffect limma RNASeq
updated 4 months ago by 42k • written 4 months ago by ▴ 10
1
vote
2
replies
425
views
Bioconductor unreachable?
limma
4 months ago edoardo • 0
0
votes
9
replies
687
views
limma fo continous variables
limma DEGseq
updated 4 months ago by 66k • written 4 months ago by • 0
0
votes
2
replies
358
views
limma model matrix questions
limmaGUI limma pairedsamples
4 months ago whyw6948 • 0
0
votes
2
replies
402
views
Limma with replicates at different time points
RNAs limma Differen
4 months ago alessandro • 0
2
votes
1
reply
361
views
Normalization factors when there is a possible unidirectional expression
limma Normalization DifferentialExpression
updated 4 months ago by ★ 4.2k • written 4 months ago by • 0
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C: ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Help with error running DiffBind
Comment: Difference between enrichGO results and Enrichr website results
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