Bioconductor IsoformSwitchAnalyzeR

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124

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 28 days ago by Michael Love 42k • written 28 days ago by 09191919 • 0

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168

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IsoformSwitchAnalyzeR

9 weeks ago Henry • 0

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301

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stringtie IsoformSwitchAnalyzeR pfamAnalyzeR gtf

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by sumitra.20 • 0

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319

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IsoformSwitchAnalyzeR satuRn

8 months ago jbono ▴ 10

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1.6k

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salmon IsoformSwitchAnalyzeR tximport RNASeqData

updated 9 months ago by k.vitting.seerup ▴ 120 • written 9 months ago by elva.gypsophila ▴ 10

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672

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IsoformSwitchAnalyzeR

10 months ago venura • 0

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450

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IsoformSwitchAnalyzeR

11 months ago Callum • 0

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1.4k

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dplyr IsoformSwitchAnalyzeR

written 13 months ago by ramon.dslps • 0

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1.8k

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AlternativeSplicing RNASeq IsoformSwitchAnalyzeR gtf

written 21 months ago by bpshtiwan ▴ 10

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2.3k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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1.2k

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isoformswitchanalyzer isoform differential isoform usage

written 5.4 years ago by A ▴ 40

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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Popular Question to Johannes Rainer ★ 2.0k