Showing : InteractionSet • reset
1
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12
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1.6k
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How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison DESeq2 InteractionSet pvalue
9 months ago paria.alipour • 0
0
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3
replies
957
views
Cannot use findOverlaps with 2 GInteractions objects with different ranges.
InteractionSet GInteractions
10 months ago Sarah ▴ 10
1
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0
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647
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subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet subsetByOverlaps GenomicInteractions
16 months ago LaureTomas ▴ 10
0
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3
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1.0k
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trying to generate an object from a virtual class ("DataFrame")
InteractionSet BuildReport
22 months ago martin.grigorov ▴ 10
0
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2
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1.3k
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Converting a GInteractions object to a dataframe
InteractionSet
3.4 years ago noag • 0
0
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1
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1.1k
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Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4 Rcpp InteractionSet IRanges Rle
updated 4.5 years ago by ★ 28k • written 4.5 years ago by • 0
0
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1
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1.0k
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How to load counts from existing count matrices in diffHic package
diffHic HiC InteractionSet
updated 4.6 years ago by ★ 28k • written 4.6 years ago by • 0
0
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2
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1.5k
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Visualizing 4c-seq as arc
genomicinteractions gviz interactionset
updated 6.0 years ago by ▴ 140 • written 6.0 years ago by • 0
2
votes
1
reply
1.5k
views
Error to rename seqlevels in Granges interactions
interactionset granges
updated 6.4 years ago by ★ 28k • written 6.4 years ago by ▴ 40
2
votes
1
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1.4k
views
Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ▴ 20
1
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5
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1.6k
views
diffHiC differential HiC analysis starting from Ginteractions object
diffhic interactionset
8.3 years ago Vivek.b ▴ 100
2
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1
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1.2k
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cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet structural variants
updated 8.3 years ago by ★ 28k • written 8.3 years ago by ▴ 200
12 results • Page 1 of 1
Recent ...
Replies
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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