Bioconductor InteractionSet

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1.8k

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DEGcomparison DESeq2 InteractionSet pvalue

11 months ago paria.alipour • 0

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InteractionSet GInteractions

12 months ago Sarah ▴ 10

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687

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InteractionSet subsetByOverlaps GenomicInteractions

18 months ago LaureTomas ▴ 10

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1.1k

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InteractionSet BuildReport

2.0 years ago martin.grigorov ▴ 10

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InteractionSet

3.5 years ago noag • 0

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1.2k

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S4 Rcpp InteractionSet IRanges Rle

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by lklei001 • 0

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1.1k

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diffHic HiC InteractionSet

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.8 years ago by girardot • 0

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1.5k

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genomicinteractions gviz interactionset

updated 6.1 years ago by liz.ingsimmons ▴ 140 • written 6.1 years ago by ferbecneu • 0

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1.5k

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interactionset granges

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by Vinicius Henrique da Silva ▴ 40

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1.5k

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diffhic hic interactionset contactmatrix inflate

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by hwick1 ▴ 20

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1.6k

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diffhic interactionset

8.5 years ago Vivek.b ▴ 100

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1.2k

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InteractionSet structural variants

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by tangming2005 ▴ 200

12 results • Page 1 of 1

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Comment: DESeq2: thousands of NA for pvalues? by fuqichen1 • 0

Hi, do these genes need to be removed from GSEA analysis?

Comment: Take a break from your FPS and try Evony! by leo • 0

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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