Showing : InteractionSet • reset
1
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How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison DESeq2 InteractionSet pvalue
13 months ago paria.alipour • 0
0
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3
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1.1k
views
Cannot use findOverlaps with 2 GInteractions objects with different ranges.
InteractionSet GInteractions
14 months ago Sarah ▴ 10
1
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0
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734
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subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet subsetByOverlaps GenomicInteractions
21 months ago LaureTomas ▴ 10
0
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3
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1.1k
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trying to generate an object from a virtual class ("DataFrame")
InteractionSet BuildReport
2.2 years ago martin.grigorov ▴ 10
0
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2
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1.5k
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Converting a GInteractions object to a dataframe
InteractionSet
3.7 years ago noag • 0
0
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1
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1.3k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4 Rcpp InteractionSet IRanges Rle
updated 4.8 years ago by ★ 28k • written 4.8 years ago by • 0
0
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1
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1.1k
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How to load counts from existing count matrices in diffHic package
diffHic HiC InteractionSet
updated 4.9 years ago by ★ 28k • written 4.9 years ago by • 0
0
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2
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1.6k
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Visualizing 4c-seq as arc
genomicinteractions gviz interactionset
updated 6.3 years ago by ▴ 140 • written 6.3 years ago by • 0
2
votes
1
reply
1.6k
views
Error to rename seqlevels in Granges interactions
interactionset granges
updated 6.8 years ago by ★ 28k • written 6.8 years ago by ▴ 40
2
votes
1
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1.5k
views
Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate
updated 7.4 years ago by ★ 28k • written 7.4 years ago by ▴ 20
1
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5
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1.7k
views
diffHiC differential HiC analysis starting from Ginteractions object
diffhic interactionset
8.7 years ago Vivek.b ▴ 100
2
votes
1
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1.3k
views
cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet structural variants
updated 8.7 years ago by ★ 28k • written 8.7 years ago by ▴ 200
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Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Comment: Question on displaying color photo as Greyscale in EBImage by Albert • 0
great and very nice
Comment: European Bioconductor Conference 2023 planning by Pandora • 0
The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
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