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Showing :
InteractionSet
•
reset
1
vote
12
replies
1.9k
views
How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison
DESeq2
InteractionSet
pvalue
12 months ago
paria.alipour
• 0
0
votes
3
replies
1.1k
views
Cannot use findOverlaps with 2 GInteractions objects with different ranges.
InteractionSet
GInteractions
13 months ago
Sarah
▴ 10
1
vote
0
replies
707
views
subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet
subsetByOverlaps
GenomicInteractions
20 months ago
LaureTomas
▴ 10
0
votes
3
replies
1.1k
views
trying to generate an object from a virtual class ("DataFrame")
InteractionSet
BuildReport
2.1 years ago
martin.grigorov
▴ 10
0
votes
2
replies
1.4k
views
Converting a GInteractions object to a dataframe
InteractionSet
3.6 years ago
noag
• 0
0
votes
1
reply
1.2k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
lklei001
• 0
0
votes
1
reply
1.1k
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
girardot
• 0
0
votes
2
replies
1.5k
views
Visualizing 4c-seq as arc
genomicinteractions
gviz
interactionset
updated 6.2 years ago by
liz.ingsimmons
▴ 140 • written 6.2 years ago by
ferbecneu
• 0
2
votes
1
reply
1.6k
views
Error to rename seqlevels in Granges interactions
interactionset
granges
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
1.5k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
hwick1
▴ 20
1
vote
5
replies
1.6k
views
diffHiC differential HiC analysis starting from Ginteractions object
diffhic
interactionset
8.6 years ago
Vivek.b
▴ 100
2
votes
1
reply
1.3k
views
cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet
structural variants
updated 8.6 years ago by
Aaron Lun
★ 28k • written 8.6 years ago by
tangming2005
▴ 200
12 results • Page
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Answer: help documentation for keytypes in annotationdbi packages
by
Eric
▴ 10
Hello, this post is quite old, but I was running into the same issue as I was unclear on what each keytype looks like. Thank you @kayla.int…
Comment: Group-specific condition effects with individuals nested: matrix is not full ra
by
picasa1983
• 0
sorry I made a typo in my table (now edited). The donor 4 actually has the 2 conditions: KO and WT. I tried something, could it be the rea…
Comment: Group-specific condition effects with individuals nested: matrix is not full ra
by
ATpoint
★ 4.7k
The problem is that donor 4 is nested with condition since it is KO for both the donor 4 samples. Removing that and then making a new donor…
Comment: Group-specific condition effects with individuals nested: matrix is not full ra
by
James W. MacDonald
68k
What happens if you remove the columns of all zeros?
Comment: Error in retrieving clinical data
by
boidnoid
• 0
I was having the same problem. You can check the answer in a [previous post][1]. Specifically, reinstalling the devel version from GitHub …
Votes
Answer: help documentation for keytypes in annotationdbi packages
Interpreting DESEQ2 interaction term and inclusion of covariate
A: Seurat/DESeq2 - single cell RNA-seq differential expression
Answer: Plot title for PCA in DESeq2
A: DESeq2: detect significantly increasing across an ordinal variable
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