Showing : InteractionSet • reset
1
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12
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1.2k
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How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison DESeq2 InteractionSet pvalue
4 months ago paria.alipour • 0
0
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3
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747
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Cannot use findOverlaps with 2 GInteractions objects with different ranges.
InteractionSet GInteractions
5 months ago Sarah ▴ 10
1
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0
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515
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subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet subsetByOverlaps GenomicInteractions
12 months ago LaureTomas ▴ 10
0
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3
replies
855
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trying to generate an object from a virtual class ("DataFrame")
InteractionSet BuildReport
17 months ago martin.grigorov ▴ 10
0
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2
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1.1k
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Converting a GInteractions object to a dataframe
InteractionSet
3.0 years ago noag • 0
0
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1
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919
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Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4 Rcpp InteractionSet IRanges Rle
updated 4.1 years ago by ★ 28k • written 4.1 years ago by • 0
0
votes
1
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879
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How to load counts from existing count matrices in diffHic package
diffHic HiC InteractionSet
updated 4.2 years ago by ★ 28k • written 4.2 years ago by • 0
0
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2
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1.3k
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Visualizing 4c-seq as arc
genomicinteractions gviz interactionset
updated 5.6 years ago by ▴ 140 • written 5.6 years ago by • 0
2
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1
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1.3k
views
Error to rename seqlevels in Granges interactions
interactionset granges
updated 6.0 years ago by ★ 28k • written 6.0 years ago by ▴ 40
2
votes
1
reply
1.3k
views
Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate
updated 6.7 years ago by ★ 28k • written 6.7 years ago by ▴ 20
1
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5
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1.4k
views
diffHiC differential HiC analysis starting from Ginteractions object
diffhic interactionset
7.9 years ago Vivek.b ▴ 100
2
votes
1
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1.1k
views
cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet structural variants
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 190
12 results • Page 1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results by alserg ▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results by alserg ▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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