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News:
Legacy Bioconductor Installation
Installation
Bioconductor
7 months ago
shepherl
4.1k
0
votes
1
reply
1.0k
views
DeSeq2 and GenomicRange installation possible conflict with bioconductor version 3.16?
DESeq2
version3.16
installation
bioconductor
GenomicRange
updated 2.0 years ago by
James W. MacDonald
67k • written 2.0 years ago by
hong
• 0
0
votes
1
reply
823
views
Regarding Installation of GEOquery
BiocManager
installation
GEOquery
updated 2.4 years ago by
Basti
▴ 780 • written 2.4 years ago by
surinder.chd90
• 0
0
votes
3
replies
3.8k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation
EnsDb.Hsapiens.v86
Bioconductor
package
ensembldb
2.5 years ago
elmfinds
• 0
0
votes
1
reply
1.3k
views
Can´t install GenomicRanges and rtracklayer
rtracklayer
GenomicRanges
Installation
updated 2.5 years ago by
James W. MacDonald
67k • written 2.5 years ago by
Johanna
• 0
0
votes
2
replies
1.5k
views
cannot install various functions in R
GRanges
packages
installation
updated 2.7 years ago by
shepherl
4.1k • written 2.7 years ago by
Eli
• 0
0
votes
3
replies
2.5k
views
More Bioconductor Package Installation Problems
package
symlinks
directories
installation
Dropbox
updated 2.7 years ago by
Hervé Pagès
16k • written 2.7 years ago by
jose
▴ 10
1
vote
6
replies
3.2k
views
Bioconductor installation problems
packages
installation
Bioconductor
updating
updated 2.8 years ago by
Marcel Ramos
700 • written 2.8 years ago by
jose
▴ 10
1
vote
1
reply
1.2k
views
list installed packages
Installation
updated 2.9 years ago by
James W. MacDonald
67k • written 2.9 years ago by
dmahoney
• 0
11
votes
11
replies
16k
views
cannot install edgeR on M1 Mac
apple
m1
installation
silicon
updated 3.0 years ago by
Gordon Smyth
52k • written 3.5 years ago by
Brian
▴ 90
1
vote
5
replies
3.9k
views
Problem with DESeq2 installation using in R 1.4.1717
DESeq2
Problem
installation
with
updated 3.5 years ago by
Lluís Revilla Sancho
▴ 760 • written 3.5 years ago by
Nahid
• 0
1
vote
1
reply
4.4k
views
Installing hdf5r without admin access
hdf5r
installation
updated 3.5 years ago by
Hervé Pagès
16k • written 3.5 years ago by
snp31
• 0
0
votes
1
reply
3.7k
views
BiocManager.rdb is corrupt
Installation
updated 3.5 years ago by
James W. MacDonald
67k • written 3.5 years ago by
gray
• 0
2
votes
2
replies
3.5k
views
Unable to install packages on MacOS
macos
installation
updated 3.6 years ago by
Kevin Blighe
★ 4.0k • written 3.6 years ago by
Joe
▴ 10
2
votes
2
replies
2.2k
views
loading scran package
scran
installation
3.9 years ago
TJ
• 0
2
votes
2
replies
1.3k
views
Feature request: Freezing Bioconductor packages to a specific date
installation
time machine
mran
rspm
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
Michael Steinbaugh
▴ 90
1
vote
3
replies
1.8k
views
unable to install DESeq2 there is no package called XML
deseq2
bioconductor
windows
xml
installation
updated 4.4 years ago by
Michael Love
43k • written 4.4 years ago by
sarah3
• 0
0
votes
1
reply
2.1k
views
ensembldb package installation issue
ensembldb
package
installation
BiocManager
updated 4.4 years ago by
Kevin Blighe
★ 4.0k • written 4.4 years ago by
dylangagler
• 0
3
votes
3
replies
1.6k
views
Incomplete Install of Bioconductor Packages
Installation
Packages
Missing
updated 4.4 years ago by
Laurent Gatto
1.6k • written 4.7 years ago by
sreedta8
▴ 10
1
vote
3
replies
4.8k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor
installation
proxy
BiocManager
updated 4.6 years ago by
Martin Morgan
25k • written 4.6 years ago by
chen
• 0
2
votes
8
replies
3.1k
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray
warning
installation
updated 4.6 years ago by
Hervé Pagès
16k • written 4.6 years ago by
inzirio
▴ 10
0
votes
1
reply
1.1k
views
Difficulty Installing Bioconductor
Installation
updated 4.6 years ago by
Martin Morgan
25k • written 4.6 years ago by
terrylthomas2804
• 0
1
vote
3
replies
4.9k
views
"Permission denied" when installing TCGAbiolinks and RTCGAToolbox
installation
permission denied
RTCGAToolbox
TCGAbiolinks
4.7 years ago
julia.tutzauer
• 0
3
votes
4
replies
1.8k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
4.7 years ago
dakarai_esgdaille
▴ 10
0
votes
2
replies
1.3k
views
Problems while installing HTSeqGenie and gmapR
software error
HTSeq
installation
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
eric33150
• 0
0
votes
2
replies
1.4k
views
Unable to install package
packages
installation
GenomeGraphs
updated 4.9 years ago by
James W. MacDonald
67k • written 4.9 years ago by
alex
• 0
5
votes
5
replies
1.2k
views
Installation: go to specific version of a package prompted
software error
installation
updated 5.0 years ago by
James W. MacDonald
67k • written 5.0 years ago by
GENOMIC_region
• 0
4
votes
5
replies
2.1k
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq
installation
5.0 years ago
gdalsky
▴ 40
2
votes
2
replies
1.2k
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 5.2 years ago by
shepherl
4.1k • written 5.2 years ago by
Krutik Patel
▴ 10
0
votes
6
replies
8.9k
views
Rhtslib - install error
Rhtslib
installation
error
zlib
updated 5.3 years ago by
leoadam014
• 0 • written 6.2 years ago by
boboshaq
• 0
0
votes
3
replies
2.1k
views
Can't install Genesis
Genesis
Installation
updated 5.4 years ago by
Mike Smith
★ 6.6k • written 5.4 years ago by
winstondunnmd
▴ 10
1
vote
4
replies
2.0k
views
flowCore install missing a dependency?
flowCore
Installation
dependency
updated 5.6 years ago by
Jake Wagner
▴ 310 • written 5.6 years ago by
Robert Baer
▴ 70
0
votes
1
reply
1.2k
views
ChemmineOB Installation RHEL
ChemmineOB
Linux
Installation
5.8 years ago
jandrosavich
• 0
0
votes
1
reply
1.1k
views
Error when install bioconductor on Mac 10.12 Sierra
installation
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
thatwasfunny
• 0
1
vote
1
reply
1.2k
views
GenomicFeatures won't install for 3.8 release
installation
biocmanager
updated 6.2 years ago by
shepherl
4.1k • written 6.2 years ago by
Michael Steinbaugh
▴ 90
0
votes
4
replies
1.7k
views
BiocManager::install() breaks; can't install bioc-devel
biocmanager
installation
6.3 years ago
Kyle Johnsen
▴ 30
0
votes
2
replies
9.8k
views
Is there a way to specify where BiocInstaller will install packages similar to the "lib=...." for install.packages?
biocinstaller
custom library path
installation
package installation
updated 6.3 years ago by
James W. MacDonald
67k • written 6.3 years ago by
ariel
▴ 20
0
votes
1
reply
1.3k
views
DelayedArray install fails to UNC path
delayedarray
bug
installation
updated 6.4 years ago by
Martin Morgan
25k • written 6.5 years ago by
simon.andrews
• 0
0
votes
1
reply
1.9k
views
install ChAMP under Ubuntu 18.04 in R 3.4.4 with error "maximal number of DLLs reached..."
ChAMP
software error
installation
6.5 years ago
chxp
• 0
0
votes
3
replies
2.4k
views
Dependency installation error due to no longer available CRAN packages ('rngtools', 'pkgmaker')
installation
minfi
bumphunter
updated 6.6 years ago by
Peter Hickey
▴ 740 • written 6.6 years ago by
muellerf
• 0
0
votes
2
replies
2.4k
views
reactome.db install problem
installation
6.7 years ago
xinfu.xia
• 0
2
votes
3
replies
1.4k
views
Cannot install Rhtslib on Mac OS 10.13
rhstlib
installation
compilation error
6.7 years ago
Ryan C. Thompson
★ 7.9k
0
votes
1
reply
2.0k
views
Install package phyloseq
installation
phyloseq
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
layeb
• 0
1
vote
1
reply
3.6k
views
Cannot use Bioconductor with new conda R installation?
bioconductor
biocinstaller
installation
conda
6.9 years ago
jol.espinoz
▴ 40
6
votes
2
replies
1.9k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite
package installation
installation
install
updated 6.9 years ago by
Mike Smith
★ 6.6k • written 6.9 years ago by
cristian
▴ 10
0
votes
3
replies
3.1k
views
ERROR: compilation failed for package RSQLite
ubuntu
installation
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
Deleted
▴ 70
0
votes
1
reply
2.8k
views
installation of package 'goseq' had non-zero exit status
goseq
installation
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
philipp.voss
• 0
0
votes
1
reply
1.4k
views
Issues installing "CardinalWorkflows"
installation
CardinalWorkflows
Imaging mass spectrometry
Cardinal
updated 7.1 years ago by
Valerie Obenchain
★ 6.8k • written 7.1 years ago by
xander.spotbeen
• 0
1
vote
0
replies
1.3k
views
Reinstalling failing - Check packages for root user, too
biocinstaller
root
installation
installation problem
7.2 years ago
charles.tilford
▴ 10
0
votes
0
replies
1.5k
views
Problem with ade4 when upgrading to Rstudio 1.1 and OpenR 3.4
phyloseq
installation
ade4
macos
7.2 years ago
sprague
• 0
50 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
by
ATpoint
★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format
by
ControlF5
• 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open!
by
Alan Downey
• 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
by
O'Brien
• 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts
by
O'Brien
• 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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