Showing : Install • reset
0
votes
2
replies
552
views
Automatically install dependencies
Install dependencies biocmanager
updated 13 days ago by 4.1k • written 16 days ago by • 0
0
votes
2
replies
816
views
Cannot install GO.db and org.Hs.eg.db
Install
updated 11 weeks ago by 68k • written 11 weeks ago by • 0
1
vote
3
replies
794
views
chemmineOB install help
ChemmineOB Install
8 months ago jrbald04 • 0
1
vote
9
replies
1.3k
views
Cannot install oligo on Fedora
oligo source Install
9 months ago • updated 8 months ago Guido Hooiveld ★ 4.1k
5
votes
6
replies
3.3k
views
Not able to install any Bioconductor 3.18 package [unable to access index]
Install
updated 9 months ago by ▴ 150 • written 9 months ago by ▴ 140
2
votes
2
replies
653
views
unable to access bioconductor packages - qvalue installation failed...
Install
updated 9 months ago by 4.1k • written 9 months ago by ▴ 10
2
votes
4
replies
1.1k
views
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Install GenomeInfoDbData GenomeInfoDb
updated 9 months ago by 68k • written 9 months ago by ▴ 20
1
vote
0
replies
4.6k
views
Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
10 months ago BioinfGuru ▴ 70
0
votes
2
replies
1.5k
views
error in install immunedeconv
Install
updated 11 months ago by • 0 • written 23 months ago by • 0
0
votes
4
replies
866
views
DNABarcodes-Installation Issue
DNABarcodes Install
13 months ago nk130 • 0
0
votes
6
replies
3.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 15 months ago by ★ 4.7k • written 2.3 years ago by • 0
0
votes
0
replies
1.2k
views
Version map cannot be validated - not mapping to new bioconductor website
Install
15 months ago Alexander • 0
2
votes
5
replies
1.9k
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 16 months ago by 43k • written 16 months ago by • 0
0
votes
7
replies
3.0k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install instal
updated 16 months ago by 68k • written 16 months ago by • 0
0
votes
1
reply
1.1k
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 19 months ago by ★ 6.6k • written 19 months ago by • 0
3
votes
5
replies
1.8k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 19 months ago by 6.7k • written 19 months ago by ▴ 20
0
votes
2
replies
882
views
msa Installation failed - please help
Install msa
21 months ago Ido • 0
1
vote
4
replies
7.2k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 22 months ago by • 0 • written 3.1 years ago by • 0
0
votes
1
reply
5.0k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor Install
updated 22 months ago by ★ 4.7k • written 22 months ago by • 0
1
vote
2
replies
1.3k
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
2.0 years ago abhisek001 • 0
1
vote
1
reply
3.2k
views
packages not installing from sources the package which needs compilation
Install
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
2
votes
4
replies
3.1k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 2.3 years ago by • 0
1
vote
7
replies
2.0k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 2.3 years ago by 4.1k • written 2.3 years ago by • 0
1
vote
3
replies
6.8k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 2.2 years ago by 4.1k • written 2.3 years ago by • 0
5
votes
18
replies
8.8k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 14 months ago by • 0 • written 3.1 years ago by • 0
0
votes
2
replies
2.1k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2 Install r
updated 2.4 years ago by ★ 4.7k • written 2.4 years ago by • 0
1
vote
20
replies
5.4k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2 Install
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
1
vote
3
replies
1.5k
views
I can't upgrade to version 3.15 in R
Install
updated 2.4 years ago by 52k • written 2.4 years ago by • 0
1
vote
1
reply
862
views
Downloading DESeq package manually
DESeq2 Install
updated 2.4 years ago by ▴ 780 • written 2.4 years ago by • 0
1
vote
1
reply
1.1k
views
Unable to install "scruff" with BiocManager::install()
scruff Install ShortRead
updated 2.5 years ago by 4.1k • written 2.5 years ago by • 0
0
votes
1
reply
1.4k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 2.7 years ago by 16k • written 2.7 years ago by • 0
2
votes
2
replies
1.3k
views
rtracklayer S.h
install
2.8 years ago gibran • 0
0
votes
1
reply
1.5k
views
trouble installing DESeq2
install packages R DESeq2
updated 2.8 years ago by 4.1k • written 2.8 years ago by • 0
0
votes
2
replies
3.2k
views
non-zero exit status when trying to install a package
Install
2.8 years ago BioC123 • 0
1
vote
3
replies
2.0k
views
Bioconductor installation error
Install
updated 2.8 years ago by • 0 • written 2.9 years ago by ▴ 10
0
votes
2
replies
1.9k
views
Installation problems
Install
updated 2.9 years ago by 4.1k • written 2.9 years ago by • 0
0
votes
2
replies
1.3k
views
Forking a package/install from source
install package fork bugfix
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
0
votes
2
replies
2.3k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub Install
updated 3.0 years ago by 4.1k • written 3.0 years ago by ▴ 70
2
votes
1
reply
4.7k
views
Bioconductor Package Installation
install TxDb.Hsapiens.UCSC.hg38.knownGene
3.0 years ago Theresa ▴ 20
1
vote
2
replies
1.2k
views
How to install R package from GitHub
Install github
updated 3.0 years ago by 4.1k • written 3.0 years ago by • 0
0
votes
3
replies
1.7k
views
Warning messages during intallation of XCMS
xcms Install
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
3
replies
2.4k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install gpart renv
updated 3.0 years ago by • 0 • written 3.1 years ago by • 0
3
votes
5
replies
12k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter Install
3.0 years ago czan ▴ 10
4
votes
2
replies
5.6k
views
Install package without updating dependent package
Install AnnotationForge
3.2 years ago 亮 • 0
5
votes
4
replies
4.4k
views
XVector installation fails because zlib.h is not found
XVector docker Install
3.3 years ago RobKo ▴ 10
0
votes
3
replies
2.1k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 3.3 years ago by ▴ 10 • written 3.4 years ago by • 0
0
votes
2
replies
1.8k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install Bioconductor DESeq2
3.4 years ago ladypurrsia ▴ 10
2
votes
4
replies
4.0k
views
BiocManager::install() does not work anymore
Install PackageType
updated 3.4 years ago by 4.1k • written 3.4 years ago by • 0
0
votes
1
reply
1.6k
views
install GenomicFeatures fail
GenomicFeatures install
updated 3.5 years ago by 68k • written 3.5 years ago by ▴ 80
0
votes
5
replies
1.8k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install VariantAnnotation Bioconductor chromVAR
updated 3.5 years ago by 6.7k • written 3.5 years ago by • 0
50 results • Page 1 of 1
Recent ...
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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840
Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Votes
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
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