Showing : IGV • reset
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411
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Unclear exon-exon connection after RSubjunc() usage
IGV Rsubjunc Rsubread
9 months ago thomas.heigl.ibk • 0
0
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0
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866
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Gviz colour reads by Read Group in AlignmentTrack
gviz igv
5.6 years ago ido.idobar • 0
0
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1
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854
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reload IGV exported feature to Gviz
gviz igv
6.5 years ago ta_awwad ▴ 10
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1.5k
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IGV like plots with GViz
gviz R IGV
7.4 years ago Deepak Tanwar ▴ 10
4
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3
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3.1k
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Is there an R package providing an R API for IGV / igvtools out there?
package IGV
updated 8.8 years ago by ▴ 470 • written 8.8 years ago by ★ 2.4k
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5
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4.2k
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A parser for Tiled Data File (TDF) format?
file format parser IO TDF IGV
8.8 years ago Henrik Bengtsson ★ 2.4k
6 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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Scholar to James W. MacDonald 67k
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