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IGV
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475
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Unclear exon-exon connection after RSubjunc() usage
IGV
Rsubjunc
Rsubread
13 months ago
thomas.heigl.ibk
• 0
0
votes
0
replies
934
views
Gviz colour reads by Read Group in AlignmentTrack
gviz
igv
5.8 years ago
ido.idobar
• 0
0
votes
1
reply
900
views
reload IGV exported feature to Gviz
gviz
igv
6.7 years ago
ta_awwad
▴ 10
0
votes
0
replies
1.6k
views
IGV like plots with GViz
gviz
R
IGV
7.7 years ago
Deepak Tanwar
▴ 10
4
votes
3
replies
3.3k
views
Is there an R package providing an R API for IGV / igvtools out there?
package
IGV
updated 9.1 years ago by
Paul Shannon
▴ 470 • written 9.1 years ago by
Henrik Bengtsson
★ 2.4k
2
votes
5
replies
4.4k
views
A parser for Tiled Data File (TDF) format?
file format
parser
IO
TDF
IGV
9.1 years ago
Henrik Bengtsson
★ 2.4k
6 results • Page
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Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
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