Showing : HtqPCR • reset
1
vote
5
replies
902
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Manual creation of qPCRset does not work
bug nondetects HTqPCR
updated 15 months ago by • 0 • written 16 months ago by ▴ 230
0
votes
3
replies
645
views
Technical Replicates in HTqPCR
HTqPCR
written 16 months ago by ▴ 230
0
votes
0
replies
822
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster qpcr qpcrNorm clusterProfiler HTqPCR
2.2 years ago Javier • 0
0
votes
0
replies
746
views
Made a pDATA manually for HTqPCR procedure
HTqPCR phenoData esetVis pData
3.3 years ago Marcelo Laia ▴ 450
0
votes
0
replies
652
views
Error when reading qPCR data in SDS format
HTqPCR
3.8 years ago Nghia • 0
1
vote
1
reply
1.5k
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 4.0 years ago by 52k • written 9.1 years ago by ▴ 40
3
votes
4
replies
3.9k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 3.3 years ago by ▴ 380 • written 4.0 years ago by ▴ 680
0
votes
0
replies
656
views
Problems creating qPCRset from RT2 array data with HTqPCR package
HTqPCR
4.6 years ago Maximilian Fuchs • 0
0
votes
0
replies
651
views
HTqPCR package, filterCategory function
HTqPCR filterCategory setCategory
updated 5.1 years ago by 67k • written 5.1 years ago by • 0
0
votes
0
replies
917
views
Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR grouping visualization R phenoData
5.5 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
768
views
Analyze ct data using HTqPCR
HTqPCR R NormqPCR
5.6 years ago annesha • 0
0
votes
0
replies
674
views
Error with HTqPCR rbind
HTqPCR
5.7 years ago NAIARA GARCÍA ▴ 10
0
votes
1
reply
1.0k
views
HTqPCR: dealing with technical replicates (filterCategory) and inability to analyze datasets with filtered genes (limmaCtData).
limma htqpcr
updated 4.0 years ago by • 0 • written 6.1 years ago by • 0
0
votes
0
replies
788
views
A problem about changeCtLayout in HTqPCR
htqpcr
6.1 years ago tropicalis • 0
0
votes
3
replies
1.1k
views
Creation of qPCRset in R for HtqPCR
R bioconductor htqpcr qpcrset object
6.3 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
894
views
Creating qPCRset object from Bio-Rad CFX file
htqpcr limma
6.3 years ago dbars • 0
0
votes
0
replies
1.0k
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
6.5 years ago jirkanov • 0
0
votes
0
replies
968
views
Inter-run calibration in HTqPCR R package
htqpcr R
6.7 years ago dbarscortina • 0
0
votes
0
replies
1.1k
views
Import problem with HTqPCR Fluidigm 96.96
htqpcr bioconductor fluidigm biomark
6.9 years ago reed27 • 0
0
votes
0
replies
990
views
HTqPCR for Fluidigm Results
htqpcr fluidigm
6.9 years ago rhonce • 0
0
votes
0
replies
1.0k
views
HTqPCR trouble with changeCtLayout
htqpcr qPCR
7.0 years ago samantha_jeschonek • 0
2
votes
2
replies
1.3k
views
Reading in delta Ct values using HTqPCR
htqpcr
updated 7.0 years ago by 52k • written 7.0 years ago by ▴ 10
0
votes
0
replies
847
views
Bugs in HTqPCR 1.30.0?
htqpcr
7.2 years ago h.roest • 0
1
vote
2
replies
1.5k
views
No differential expression with limmaCtData possible
limma htqpcr
7.2 years ago h.roest • 0
0
votes
0
replies
858
views
HTqPCR package: problems with the limmaCtData function
htqpcr
7.6 years ago Frederico Moraes Ferreira ▴ 100
0
votes
1
reply
1.1k
views
Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
htqpcr
7.8 years ago carine.genet • 0
0
votes
0
replies
971
views
re-format data for HtqPCR
HtqPCR reshape
7.9 years ago Stefany Solano • 0
0
votes
1
reply
1.3k
views
HTqPCR cannot read more recent SDS files
htqpcr
updated 8.0 years ago by • 0 • written 8.0 years ago by ▴ 40
0
votes
3
replies
1.4k
views
HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 8.0 years ago by • 0 • written 8.0 years ago by ▴ 40
0
votes
0
replies
1.0k
views
Batch Correction in HTqPCR?
qPCR htqpcr
8.0 years ago bradley • 0
3
votes
1
reply
1.6k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 8.0 years ago by ▴ 40 • written 8.2 years ago by ▴ 20
0
votes
1
reply
1.4k
views
HTqPCR: bug in subsetting qPCRset
HTqPCR htqpcr subsetting
updated 8.0 years ago by ▴ 40 • written 8.2 years ago by ★ 4.1k
3
votes
7
replies
2.3k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
8.0 years ago henrik.seidel ▴ 40
0
votes
0
replies
964
views
HTqPCR - Multiple plates for multiple samples
htqpcr
8.3 years ago Angela LR • 0
0
votes
0
replies
1.1k
views
HTqPCR limma decide test issue?
limma decide test HTqPCR
8.3 years ago polemiraza ▴ 70
0
votes
1
reply
1.5k
views
Possible bug in setCategory function from HTqPCR package
htqpcr HTqPCR
updated 8.3 years ago by • 0 • written 10.2 years ago by ▴ 830
0
votes
0
replies
876
views
setCategory flag and flag.pout argument problems
htqpcr
8.4 years ago h.roest • 0
0
votes
0
replies
1.2k
views
Combining TLDA cards for normalization
normalization microrna htqpcr
8.5 years ago jamie_jabalee • 0
1
vote
0
replies
2.1k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR readCtData Heidi Dvinge
8.8 years ago virginia.claudio ▴ 10
0
votes
0
replies
1.2k
views
Error in readCtData
htqpcr readctdata connection readlines
8.8 years ago lizhensor • 0
0
votes
0
replies
1.1k
views
Help with loading Data and reading Ct values
htqpcr
8.9 years ago Pheebz • 0
0
votes
0
replies
1.1k
views
error in reading files using HTqPCR
htqpcr
11.3 years ago • updated 9.1 years ago Alex ▴ 10
0
votes
1
reply
1.3k
views
featureNames converted to numbers in limmaCtData
limma htqpcr
9.5 years ago julio.c.silver • 0
1
vote
7
replies
1.9k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma ndups htqpcr software error
updated 9.5 years ago by 52k • written 9.5 years ago by • 0
0
votes
0
replies
1.7k
views
Problems importing (new) LightCycler data to HTqPCR
htqpcr dataimport
9.8 years ago H.H. • 0
0
votes
2
replies
1.4k
views
HTqPCR + setting flags as unreliable problem
htqpcr flags setCategory
10.1 years ago samantha.smith-4 • 0
0
votes
0
replies
1.2k
views
Bugs in HTqPCR implementation of data normalization
Normalization HTqPCR Normalization HTqPCR
10.6 years ago Peter Langfelder ★ 3.0k
0
votes
0
replies
2.3k
views
reading qRT-PCR data
ddCt HTqPCR ReadqPCR ddCt HTqPCR ReadqPCR
10.7 years ago Guest User ★ 13k
0
votes
5
replies
1.7k
views
Reading in mutiple files using readCtData
HTqPCR HTqPCR
updated 10.9 years ago by 67k • written 10.9 years ago by ▴ 50
2
votes
1
reply
1.5k
views
HTqPCR- gene names not maintained in limmaCtData
annotate ddCt HTqPCR annotate ddCt HTqPCR
10.9 years ago Cornwell, Adam ▴ 110
50 results • Page 1 of 1
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Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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