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Showing :
HiC
•
reset
0
votes
0
replies
344
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
7 months ago
user_bioinfo
• 0
0
votes
2
replies
600
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 16 months ago by
IsMM
• 0
0
votes
0
replies
1.1k
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
2.8 years ago
xubeisi
• 0
0
votes
0
replies
1.2k
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
3.4 years ago
Ankit
▴ 20
0
votes
3
replies
1.1k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 2.9 years ago by
merve.sahn
• 0 • written 4.4 years ago by
mtS
• 0
0
votes
0
replies
762
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
4.4 years ago
changxu.fan
▴ 20
1
vote
7
replies
2.0k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 4.6 years ago by
Aaron Lun
★ 28k • written 4.6 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
1.1k
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
girardot
• 0
0
votes
1
reply
1.2k
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
c.chakraborty
• 0
0
votes
3
replies
1.8k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 6.2 years ago by
bioparticles.melly
• 0 • written 6.2 years ago by
m.t.lorenc
• 0
0
votes
9
replies
2.0k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
mictadlo
▴ 10
0
votes
1
reply
1.1k
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
6.3 years ago
mictadlo
▴ 10
1
vote
1
reply
1.8k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
gryderart
• 0
2
votes
1
reply
1.5k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
hwick1
▴ 20
0
votes
8
replies
2.0k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
hwick1
▴ 20
2
votes
2
replies
1.7k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
7.7 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
1.9k
views
GOTHiC hg19 error
GOTHiC
hic
9.5 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
3.1k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
9.6 years ago
Bogdan
▴ 670
18 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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