Showing : HeatMap • reset
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926
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Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 8 months ago by ▴ 780 • written 8 months ago by • 0
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0
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922
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
17 months ago gianni.drm • 0
1
vote
3
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1.1k
views
Interpretation of LRT results
DESeq2 LRT Heatmap
updated 9 months ago by 66k • written 20 months ago by ▴ 10
3
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2
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2.2k
views
Complex Heatmap shows just one color
Heatmap ComplexHeatmap colorRamp
3.2 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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664
views
How to overlap heatmaps on Gviz?
Givz heatmap overlap combine information
4.1 years ago kris.petrini • 0
5
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11
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2.8k
views
Heatmap only including DE genes?
heatmap coolmap pheatmap
updated 4.2 years ago by 51k • written 4.2 years ago by ▴ 60
4
votes
6
replies
18k
views
R studio input style for generating heatmap (RNAseq)
heatmap r studio log2foldchange
updated 4.4 years ago by ★ 13k • written 4.4 years ago by • 0
0
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3
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746
views
how to draw multiple heatmap from GeneOverlap
GeneOverlap multiple figures heatmap
updated 4.4 years ago by 66k • written 4.4 years ago by ▴ 140
0
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6
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1.8k
views
Breaking down the output from plotEigengeneNetworks()
WGCNA Heatmap EigenGeneNetworks
4.7 years ago l.s.wijaya • 0
1
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2
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1.3k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress heatmap gene ontology plot
updated 4.7 years ago by ▴ 350 • written 4.7 years ago by • 0
3
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7
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3.3k
views
Handle missing values in the z-score matrix while plotting heatmap in the ComplexHeatmap
matrix heatmap ComplexHeatmap missing values R
updated 4.8 years ago by ▴ 270 • written 4.8 years ago by ▴ 10
0
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2
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1.3k
views
a newbie question on ConsensusClusterPlus
consensusclusterplus heatmap
4.9 years ago niki.nowhere • 0
0
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2
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4.2k
views
Heatmap of selected genes
heatmap DEGs RNAseq DESeq2
updated 4.9 years ago by ▴ 280 • written 4.9 years ago by • 0
2
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3
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1.6k
views
RNAseq and heatmap
deseq2 RNA-seq Heatmap
updated 4.9 years ago by 42k • written 4.9 years ago by ▴ 10
2
votes
8
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3.5k
views
removing batch effect using DESeq and sva
sva deseq2 batch effect PCA heatmap
updated 5.1 years ago by 42k • written 5.1 years ago by ▴ 10
0
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0
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2.0k
views
Adjusting the size of the visual output from cluster profiler
clusterProfiler heatmap GOAnalysis
5.1 years ago anthony.nash ▴ 20
0
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0
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1.3k
views
Clustering large dataset
HeatMap Cairo Graphics Device Failed to create Cairo backend seqplots
updated 5.3 years ago by 3.9k • written 5.3 years ago by ▴ 450
1
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1
reply
1.4k
views
How to get the order of the gene list and indivdual cluster from the big heatmap made by heatmap2.0?
annotation heatmap
updated 5.4 years ago by 66k • written 5.4 years ago by • 0
0
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0
replies
671
views
Superheat adjusting making left label size
r R heatmap
5.5 years ago coyoung ▴ 10
0
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1
reply
1.3k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 5.5 years ago by ▴ 150 • written 5.6 years ago by • 0
4
votes
1
reply
2.6k
views
benefits of pearson distance for hierarchical clustering
heatmap.3 heatmap
updated 5.6 years ago by 66k • written 5.6 years ago by ▴ 50
1
vote
2
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1.1k
views
genes repeated in the heatmap several times(10x) when using limma
limma normalization heatmap design and contrast matrix cancer
updated 5.7 years ago by ★ 1.0k • written 5.7 years ago by • 0
0
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1
reply
1.1k
views
PureCN Solution Heatmap values
PureCN heatmap likelihoods
5.8 years ago twtoal ▴ 10
0
votes
4
replies
1.4k
views
PureCN optimum solution vs heat map
PureCN Solution Heatmap
updated 5.9 years ago by ▴ 130 • written 5.9 years ago by ▴ 10
7
votes
6
replies
5.9k
views
scaling data for clustering heat map
edger heatmap clustering differential gene expression rnaseq
updated 6.1 years ago by 51k • written 6.1 years ago by ▴ 60
1
vote
1
reply
993
views
Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
heatmap chippeakanno
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
3
votes
5
replies
2.1k
views
DEGs of microarray Data and hierarchical clustering and visualizing using heatmap
limma heatmap DEGs
updated 6.4 years ago by 51k • written 6.4 years ago by ▴ 30
1
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1
reply
1.2k
views
Including taxa names in heatmap in metagenomeseq
gut microbiome heatmap metagenomeseq
updated 6.4 years ago by ▴ 280 • written 6.4 years ago by • 0
0
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1
reply
1.4k
views
How to control the size of labels on heatmaps in DiffBind
diffbind labels heatmap
updated 6.6 years ago by ★ 5.2k • written 6.6 years ago by • 0
2
votes
2
replies
1.1k
views
Problem with using `GRheatmapData` function in compEpiTools package
compEpiTools error heatmap
updated 6.8 years ago by ▴ 200 • written 6.8 years ago by • 0
0
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1
reply
1.4k
views
phyloseq heatmap blank after multiple package updates
phyloseq heatmap
updated 6.8 years ago by ★ 13k • written 6.8 years ago by • 0
0
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1
reply
1.3k
views
How to generate heatmap for three groups
rnaseq ruvseq heatmap
updated 7.0 years ago by 66k • written 7.0 years ago by • 0
0
votes
1
reply
2.1k
views
Unsupervised heatmap use tpm or rlog gave different results
deseq2 tpm heatmap pheatmap
updated 7.1 years ago by 42k • written 7.1 years ago by ▴ 40
0
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2
replies
5.0k
views
DESeq2: how to interpret the heatmap clustering samples
deseq2 rlog transformation heatmap scale
7.3 years ago • updated 7.2 years ago lina.faller ▴ 10
0
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0
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1.8k
views
use control_condition in heatmap with cummeRbund
cummerbund heatmap
7.3 years ago domenico.somma • 0
6
votes
3
replies
7.0k
views
Heatmap Plotting in R
heatmap R bioconductor
9.0 years ago • updated 7.3 years ago Deepak Tanwar ▴ 10
0
votes
0
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1.5k
views
cummeRbund heatmap for specific isoforms (not genes)
cummerbund heatmap isoforms transcript_id
7.3 years ago domenico.somma • 0
1
vote
2
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2.0k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind heatmap correlation
updated 7.3 years ago by ★ 5.2k • written 7.3 years ago by • 0
0
votes
1
reply
1.2k
views
Is it possible to create a Metagenomeseq heatmap with two coloured bars on the top?
metagenomeseq heatmap
updated 7.3 years ago by 66k • written 7.3 years ago by • 0
2
votes
7
replies
5.0k
views
Heatmap of a subset of genes
heatmap
written 8.2 years ago by ▴ 40
2
votes
1
reply
3.6k
views
Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap heatmap.2 dendrogram dendextend heatmap
updated 7.7 years ago by ▴ 200 • written 7.7 years ago by ▴ 660
0
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0
replies
6.5k
views
Pheatmap: how to use breaks for pheatmap
pheatmap heatmap
7.7 years ago jarod_v6@libero.it ▴ 40
1
vote
4
replies
1.4k
views
Methylation profile through chromosome
R heatmap
7.9 years ago Adam • 0
2
votes
1
reply
1.6k
views
DiffBind affinity vs occupancy Heatmaps
diffbind heatmap pearsoncorrelation
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by ▴ 10
0
votes
8
replies
1.5k
views
Regarding general understanding of DiffBind
diffbind heatmap
8.0 years ago shubhibartaria ▴ 10
5
votes
2
replies
13k
views
Complex Heatmap - hide one legend, show 2 - out off three annotations
complexheatmap bioconductor annotation heatmap legend
8.2 years ago • updated 8.0 years ago annkatrin.goepfert ▴ 10
0
votes
5
replies
1.8k
views
What color is assigned in heatmap for time series analysis
deseq2 time course heatmap
updated 8.1 years ago by ▴ 10 • written 8.1 years ago by ▴ 10
1
vote
3
replies
1.7k
views
DESeq2 with paired data Heatmap
deseq2 heatmap
updated 8.1 years ago by ★ 13k • written 8.1 years ago by • 0
1
vote
2
replies
1.0k
views
What are the expression value of genes/probes in limma results of topTable
Heatmap
updated 8.1 years ago by ★ 28k • written 8.1 years ago by • 0
1
vote
5
replies
4.4k
views
Heatmaps with replicates or triplicate data sets with counts to EdgeR, DESeq, or DESeq2
heatmap.2 heatmap edgeR deseq2 deseq
updated 8.2 years ago by 42k • written 8.2 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results by alserg ▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results by alserg ▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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