Bioconductor HTseq

Showing : HTseq • reset

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863

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DEXSeq HTSeq R

16 months ago • updated 15 months ago yr542 • 0

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1.3k

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DESeq2 microRNA HTSeq

24 months ago abhay.kanodia • 0

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995

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by abhay.kanodia • 0

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948

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DESeq2 htseq DEGseq RNASeq read

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by CP • 0

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1.3k

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software error HTSeq installation

updated 4.8 years ago by Martin Morgan 25k • written 4.8 years ago by eric33150 • 0

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4.8k

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voom htseq edgeR limma RNASeq123

updated 5.9 years ago by Gordon Smyth 52k • written 7.5 years ago by wd ▴ 30

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1.7k

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DEXSeq dexseq_count htseq

7.8 years ago mat.lesche ▴ 110

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2.1k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

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Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k