Showing : HTseq • reset
0
votes
2
replies
830
views
DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq HTSeq R
15 months ago • updated 14 months ago yr542 • 0
1
vote
6
replies
1.3k
views
low counts from microRNA seq
DESeq2 microRNA HTSeq
23 months ago • updated 22 months ago abhay.kanodia • 0
0
votes
1
reply
971
views
Error in DESeqDataSetFromHTSeqCount
DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount
updated 23 months ago by 42k • written 24 months ago by • 0
0
votes
2
replies
925
views
RNA-Seq Reads Count
DESeq2 htseq DEGseq RNASeq read
updated 2.0 years ago by 42k • written 2.1 years ago by • 0
0
votes
2
replies
1.3k
views
Problems while installing HTSeqGenie and gmapR
software error HTSeq installation
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
12
votes
4
replies
4.8k
views
differential expression analysis of htseq data with edgeR/voom
voom htseq edgeR limma RNASeq123
updated 5.9 years ago by 51k • written 7.4 years ago by ▴ 30
0
votes
1
reply
1.7k
views
counting with htseq script in DEXSeq
DEXSeq dexseq_count htseq
7.7 years ago mat.lesche ▴ 110
1
vote
6
replies
2.1k
views
Error: could not find function "HTSeqCounts"
HTSeq HTSeqCounts Could not find function DEXSeq
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 10
8 results • Page 1 of 1
Recent ...
Replies
Comment: Appropriate ways to filter counts data for voom/limma by dorothylminter • 0
The proper way to filter count data for voom/limma emphasizes the importance of choosing the right filtering technique to enhance detection…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Comment: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
Awards • All
Popular Question to Robert Castelo ★ 3.4k
Popular Question to Michael Stadler ▴ 350
Scholar to ATpoint ★ 4.5k
Commentator to James W. MacDonald 67k
Popular Question to Stefano Mangiola ▴ 20
Locations • All
United Kingdom, just now
United Kingdom, 1 minute ago
Italy, 5 minutes ago
France, 19 minutes ago
WEHI, Melbourne, Australia, 33 minutes ago
Traffic: 759 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6