Bioconductor HTSeq

Showing : HTSeq • reset

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DEXSeq HTSeq R

20 months ago yr542 • 0

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DESeq2 microRNA HTSeq

2.4 years ago • updated 2.3 years ago abhay.kanodia • 0

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 2.4 years ago by Michael Love 43k • written 2.4 years ago by abhay.kanodia • 0

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DESeq2 htseq DEGseq RNASeq read

updated 2.5 years ago by Michael Love 43k • written 2.5 years ago by CP • 0

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software error HTSeq installation

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by eric33150 • 0

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voom htseq edgeR limma RNASeq123

updated 6.3 years ago by Gordon Smyth 52k • written 7.9 years ago by wd ▴ 30

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DEXSeq dexseq_count htseq

8.2 years ago mat.lesche ▴ 110

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Votes

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

Awards • All

Great Question to inzirio ▴ 10