Showing : HTSeq • reset
0
votes
2
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DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq HTSeq R
15 months ago • updated 14 months ago yr542 • 0
1
vote
6
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1.3k
views
low counts from microRNA seq
DESeq2 microRNA HTSeq
23 months ago • updated 22 months ago abhay.kanodia • 0
0
votes
1
reply
972
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Error in DESeqDataSetFromHTSeqCount
DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount
updated 23 months ago by 42k • written 24 months ago by • 0
0
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2
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926
views
RNA-Seq Reads Count
DESeq2 htseq DEGseq RNASeq read
updated 2.0 years ago by 42k • written 2.1 years ago by • 0
0
votes
2
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1.3k
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Problems while installing HTSeqGenie and gmapR
software error HTSeq installation
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
12
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4
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4.8k
views
differential expression analysis of htseq data with edgeR/voom
voom htseq edgeR limma RNASeq123
updated 5.9 years ago by 51k • written 7.4 years ago by ▴ 30
0
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1
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1.7k
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counting with htseq script in DEXSeq
DEXSeq dexseq_count htseq
7.7 years ago mat.lesche ▴ 110
1
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6
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2.1k
views
Error: could not find function "HTSeqCounts"
HTSeq HTSeqCounts Could not find function DEXSeq
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 10
8 results • Page 1 of 1
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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