Showing : Gviz • reset
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Simple confidence intervall Gviz
Gviz
4 weeks ago William • 0
0
votes
1
reply
1.4k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
updated 3 months ago by • 0 • written 3.3 years ago by ▴ 60
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0
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246
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Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage Gviz sashimi
6 months ago Marco • 0
0
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3
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1.6k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 8 months ago by • 0 • written 19 months ago by • 0
0
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3
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624
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Gviz and custom database
Gviz
updated 10 months ago by 68k • written 10 months ago by • 0
1
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2
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1.9k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 11 months ago by ▴ 230 • written 2.1 years ago by ▴ 10
0
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1
reply
514
views
GC content track on GVIZ
Gviz
updated 14 months ago by 68k • written 14 months ago by • 0
1
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3
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2.3k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 17 months ago by ▴ 750 • written 3.9 years ago by • 0
0
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0
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665
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
17 months ago dbsgtk • 0
1
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0
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858
views
Gviz : UcscTrack
rtracklayer UCSC Gviz
17 months ago yujin ▴ 10
1
vote
3
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959
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 17 months ago by 16k • written 17 months ago by ▴ 10
0
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5
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2.5k
views
Gviz: UcscTrack and "GC Percent" information
Gviz coMET
2.3 years ago • updated 18 months ago Daniel E. Weeks ▴ 30
0
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2
replies
811
views
how to add annotation on individual track
Gviz
updated 23 months ago by ▴ 750 • written 23 months ago by ▴ 60
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0
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626
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
2.1 years ago Vinicius Henrique da Silva ▴ 40
0
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0
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995
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
2.2 years ago gilliangoobie • 0
0
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2
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1.7k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi Gviz
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
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1
reply
1.4k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
2.7 years ago rohitsatyam102 ▴ 20
4
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1
reply
2.2k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
1
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3
replies
2.5k
views
GVIZ giving error with loading hg38 genome
R Gviz
3.0 years ago RUser743 • 0
1
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2
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2.0k
views
Gviz and datatracks
Gviz
updated 3.1 years ago by • 0 • written 3.2 years ago by ▴ 670
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0
replies
761
views
Color of 2nd exon
GViz
3.2 years ago underscore • 0
1
vote
1
reply
1.2k
views
Gviz DataTrack data transformation on the fly
aggregation Gviz DataTrack
updated 3.2 years ago by ▴ 750 • written 3.3 years ago by ▴ 10
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0
replies
889
views
Modify y axis or add second y axis in Gviz
OverlayTrack Gviz
3.3 years ago Robert ▴ 10
4
votes
4
replies
2.8k
views
Gviz: ylim of the AlignmentsTrack
gviz gviz-package
updated 3.3 years ago by ▴ 120 • written 6.5 years ago by ▴ 10
0
votes
0
replies
775
views
Y axis Data Track GVIZ
GVIZ
3.5 years ago • updated 3.3 years ago rbenel ▴ 40
1
vote
1
reply
1.9k
views
GVIZ on R not loading mm10 from UCSC
Gviz
3.5 years ago RUser743 • 0
0
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3
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1.3k
views
Details AnnotationTrack swap densityplot and connectors
Gviz
3.5 years ago Hartorthereal • 0
1
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3
replies
1.7k
views
Gradient dotplot
Gviz
3.6 years ago sophieagger • 0
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0
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1.1k
views
One read per line and other ordering of reads in Gviz
Gviz
3.6 years ago pillailab1 • 0
0
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4
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1.6k
views
window parameter in DataTrack function with a single sample
Gviz
3.6 years ago • updated 3.5 years ago rbenel ▴ 40
0
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1
reply
1.4k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 3.6 years ago by 68k • written 3.6 years ago by ▴ 10
0
votes
4
replies
1.7k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 2.2 years ago by 68k • written 3.7 years ago by • 0
1
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3
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1.5k
views
Can't produce a generegiontrack from my txdb anymore
gviz GenomicFeatures
3.7 years ago A.J. ▴ 20
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0
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1.1k
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Combining dataTracks in Gviz by averaging or subtraction
Gviz
3.9 years ago gdeniz • 0
0
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0
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995
views
Gviz - Fixed width of title panel on left
Gviz
3.9 years ago rheery • 0
0
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0
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897
views
Gviz: set colors for UTRs
plot color Gviz utr
4.0 years ago ginlucks • 0
0
votes
3
replies
1.3k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 4.0 years ago by 68k • written 4.0 years ago by • 0
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0
replies
1.2k
views
Gviz import lor reads from bam file
Gviz longreads
4.0 years ago ginlucks • 0
0
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1
reply
972
views
two tracks have the same axis
plot Gviz
4.4 years ago 腾 • 0
0
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2
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1.3k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
4.4 years ago Vaibhav • 0
0
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2
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1.3k
views
Gviz vertical text labels
Gviz
updated 4.4 years ago by 68k • written 4.4 years ago by ▴ 90
0
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1
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1.2k
views
Gviz, keeping strand information while zooming in
Gviz strand
4.5 years ago svenbioinf • 0
2
votes
2
replies
1.6k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 4.6 years ago by 68k • written 4.6 years ago by ▴ 10
0
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1
reply
1.3k
views
Gviz package for plotting DMRs
Gviz DMRs
updated 4.7 years ago by ▴ 750 • written 4.7 years ago by • 0
0
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3
replies
2.8k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
4.8 years ago roman.hillje • 0
1
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3
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1.1k
views
Highlight uniq transcripts in Gviz
Gviz
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
0
votes
2
replies
1.3k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 4.9 years ago by ▴ 750 • written 4.9 years ago by • 0
0
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2
replies
1.4k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz plotTracks
updated 5.1 years ago by ▴ 750 • written 5.1 years ago by • 0
0
votes
4
replies
1.5k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 5.1 years ago by ▴ 140 • written 5.1 years ago by ▴ 30
0
votes
1
reply
1.2k
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 5.2 years ago by ▴ 750 • written 5.7 years ago by ▴ 10
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Answer: fast apply on RleList by story.benjamin ▴ 20
solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…
Comment: fast apply on RleList by story.benjamin ▴ 20
Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
Answer: fast apply on RleList by James W. MacDonald 68k
There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…
Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k
It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…
Comment: how to use `arrayWeightsQuick()`? by matthew • 0
In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.
Votes
annotation EpicV2
Answer: fast apply on RleList
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
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