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Graph
•
reset
0
votes
1
reply
365
views
Create a Graph w/ Only the Genes Interaction
EnrichedPathways
GeneInteractionGraph
graph
7 months ago
Antonio
• 0
0
votes
3
replies
1.4k
views
Representation of self-loops and the calculation of degrees
graph
updated 16 months ago by
Vincent J. Carey, Jr.
6.7k • written 2.1 years ago by
Szabolcs
• 0
2
votes
4
replies
5.2k
views
Unable to upload an App in shinyapps.io with bioconductor packages
shinny
graph
RBGL
updated 22 months ago by
Hamid
▴ 10 • written 4.0 years ago by
Xavier-Andoni
• 0
0
votes
1
reply
1.2k
views
maSigPro see.genes expression profile graphs. Change color and label text size
maSigPro
graph
updated 4.2 years ago by
Mª José Nueda
▴ 90 • written 4.2 years ago by
Itzel
• 0
3
votes
3
replies
2.1k
views
Can't install graph package
graph
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
tyler
▴ 10
1
vote
2
replies
1.1k
views
Library for Node Influence package
Graph
gene regulatory network
node influence
gene ranking
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
omarrafiqued
▴ 50
0
votes
0
replies
1.2k
views
igraph PoTRA error
graph
pathways
igraph
6.9 years ago
genomic8328
▴ 10
1
vote
4
replies
2.5k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest
chemminer
fmcsr
graph
written 6.9 years ago by
Joris.Meys
• 0
2
votes
1
reply
2.2k
views
Pathview graph with multiple states/samples or time series
Pathways
graph
Pathways
graph
updated 7.0 years ago by
atanas.kamburov
• 0 • written 11.3 years ago by
Luo Weijun
★ 1.6k
1
vote
1
reply
1.3k
views
How to get the list of the components of all containers from the active RedeR session?
reder
graph
updated 7.3 years ago by
m castro
▴ 10 • written 7.3 years ago by
luca.zoccarato
▴ 10
0
votes
1
reply
1.3k
views
CRISPRseek How to get a correct result of searchHits2 ?
crisprseek
graph
updated 7.5 years ago by
Julie Zhu
★ 4.3k • written 7.5 years ago by
liuyue235
• 0
0
votes
1
reply
1.4k
views
Visualizing Linear Model Coefficients in R
R
deseq2
graph
linear model
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
nathanguy14
• 0
2
votes
3
replies
3.9k
views
How to convert graphNEL object into Adjacency Matrix?
graph
kegggraph
xml
updated 7.8 years ago by
Robert Castelo
★ 3.4k • written 7.8 years ago by
urwaCFC
• 0
2
votes
2
replies
2.7k
views
Best practices for converting adj matrix -> graphNEL
graph
adjacency matrix
8.1 years ago
bryon
▴ 10
1
vote
1
reply
1.3k
views
Fastest way to get the distances between pairs of graph nodes
graph
rgbl
dag
updated 8.2 years ago by
Wolfgang Huber
★ 13k • written 8.2 years ago by
rubi
▴ 110
0
votes
1
reply
1.3k
views
ChIPseeker plotAvgProf2: order of panels
graph
updated 8.4 years ago by
Guangchuang Yu
★ 1.2k • written 8.4 years ago by
Pufall, Miles A
▴ 30
0
votes
1
reply
2.4k
views
Gviz Sashimi Plot height/colour/count
graph
gviz
updated 8.4 years ago by
Robert Ivanek
▴ 750 • written 8.7 years ago by
oberlins
▴ 10
0
votes
1
reply
1.3k
views
plot pdf error
graph
updated 8.8 years ago by
Axel Klenk
★ 1.0k • written 8.8 years ago by
anu.kour
• 0
3
votes
2
replies
2.8k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 8.8 years ago by
Peter Langfelder
★ 3.0k • written 8.8 years ago by
Alan Smith
▴ 150
1
vote
1
reply
1.7k
views
Rgraphviz and margins
graph
Rgraphviz
graph
Rgraphviz
updated 9.0 years ago by
sebastian.wolf
• 0 • written 13.6 years ago by
Robert Stojnic
▴ 80
0
votes
2
replies
2.1k
views
cummRbund MDSplot error
software error
graph
R
cummerbund
updated 9.2 years ago by
loyalgoff
• 0 • written 9.2 years ago by
chenbeijun
• 0
2
votes
2
replies
2.1k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz
Plot
NA
graph
Job
updated 9.5 years ago by
James W. MacDonald
67k • written 9.5 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.3k
views
Graph isomorphism in Rcytoscape
graph
isomorphism in Rcytoscape
updated 9.6 years ago by
Diego Diez
▴ 760 • written 9.6 years ago by
priyankanimavat.m
• 0
0
votes
1
reply
2.2k
views
Graph viewer for Reactome Pathways
bioconductor
package
reactome
graph
updated 9.6 years ago by
Johannes Rainer
★ 2.1k • written 9.7 years ago by
Deepak Tanwar
▴ 10
0
votes
5
replies
2.3k
views
R plot error
r
bioconductor
graph
plot
data representation in graphical forms
9.7 years ago
megha.24may
• 0
0
votes
2
replies
2.2k
views
How to specifiy colors for polygon links when using circos function of OmicCircos package
graph
omiccircos
updated 9.9 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.9 years ago by
wei.shen
• 0
0
votes
4
replies
4.0k
views
R graphs: all paths lengths between two nodes in a directed graph
graph
graph
updated 10.0 years ago by
lo_ken
• 0 • written 15.8 years ago by
Victoria V Plamadeala
▴ 20
2
votes
2
replies
2.3k
views
GO offspring consistency
annotation
GO
graph
gene ontology
updated 10.2 years ago by
Laurent Gatto
1.6k • written 10.2 years ago by
jelle.goeman
• 0
0
votes
3
replies
1.8k
views
generating graph with different rown ames and column names
graph
rgraphviz
updated 10.2 years ago by
Hervé Pagès
16k • written 10.2 years ago by
tyrone.williams.701
• 0
0
votes
4
replies
2.7k
views
Error for plotDEXSeq and warning for estimateDispersions
graph
DEXSeq
updated 10.3 years ago by
Alejandro Reyes
★ 1.9k • written 10.3 years ago by
Emmanouela Repapi
▴ 20
0
votes
1
reply
1.7k
views
Problem in K- means clustering
hgu133plus2
graph
hgu133plus2
graph
updated 10.5 years ago by
Sonali Arora
▴ 390 • written 10.4 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.3k
views
bug in graph::removeEdge() on UGs with graphBAM objects
graph
graph
10.5 years ago
Robert Castelo
★ 3.4k
0
votes
1
reply
1.4k
views
updating edge visualization rules of an existing graph in RedeR
graph
RedeR
graph
RedeR
updated 10.5 years ago by
m castro
▴ 10 • written 10.5 years ago by
burak kutlu
▴ 200
0
votes
1
reply
1.5k
views
Sciplot: Increasing the width of bargraph and decreasing the sapce b/n groups
graph
graph
updated 10.8 years ago by
James W. MacDonald
67k • written 10.8 years ago by
Roopa Subbaiaih
▴ 130
0
votes
5
replies
3.9k
views
Gviz AnnotationTrack - Consistent y-scales
Coverage
Annotation
graph
Gviz
Coverage
Annotation
graph
Gviz
updated 10.8 years ago by
Lance Parsons
▴ 130 • written 10.8 years ago by
Aliaksei Holik
▴ 350
0
votes
0
replies
1.4k
views
Rgraphviz compilation error
graph
Rgraphviz
PROcess
graph
Rgraphviz
PROcess
10.8 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
1.5k
views
Plotting per base coverage from genomecoveragebed utility
graph
graph
10.8 years ago
gv
▴ 40
0
votes
9
replies
3.3k
views
Rgraphviz compilation error
graph
graph
updated 10.8 years ago by
Vladimir Zhurov
▴ 70 • written 10.8 years ago by
Guest User
★ 13k
0
votes
5
replies
1.9k
views
problem with makeGOGraph function
Yeast
graph
GOstats
Yeast
graph
GOstats
updated 10.9 years ago by
James W. MacDonald
67k • written 10.9 years ago by
Guest User
★ 13k
0
votes
0
replies
2.0k
views
edgeR: regarding Poisson distribution and goodness of
Normalization
graph
edgeR
Normalization
graph
edgeR
11.0 years ago
Yunshun Chen
▴ 900
0
votes
0
replies
1.5k
views
edgeR: regarding Poisson distribution and goodness of fit graph
Normalization
graph
edgeR
Normalization
graph
edgeR
11.0 years ago
Guest User
★ 13k
0
votes
1
reply
1.7k
views
how to determine what kind of dispersion to use
graph
edgeR
graph
edgeR
updated 11.0 years ago by
Ryan C. Thompson
★ 7.9k • written 11.0 years ago by
Guest User
★ 13k
0
votes
5
replies
5.1k
views
Problem with exporting graph from plotPCA() in a DESeq2 function
graph
DESeq2
graph
DESeq2
updated 11.0 years ago by
Michael Love
43k • written 11.0 years ago by
Guest User
★ 13k
0
votes
2
replies
2.3k
views
What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression
Visualization
graph
limma
Visualization
graph
limma
updated 11.0 years ago by
Gordon Smyth
52k • written 11.0 years ago by
Heather Estrella
▴ 30
0
votes
1
reply
1.3k
views
FLowClust/FLowCore
graph
flowCore
graph
flowCore
updated 11.0 years ago by
Jiang, Mike
★ 1.3k • written 11.0 years ago by
Guest User
★ 13k
0
votes
0
replies
1.8k
views
pathview vectorized output?
Pathways
graph
pathview
Pathways
graph
pathview
11.0 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
1.5k
views
Statistics questions regarding the use of Ambion ExFold ERCC standards with Affmetrix ST arrays.
Normalization
vsn
graph
Normalization
vsn
graph
updated 11.1 years ago by
James W. MacDonald
67k • written 11.1 years ago by
Matthew Thornton
▴ 380
0
votes
4
replies
2.4k
views
RCytoscape: object 'graph' not found error
graph
RCytoscape
graph
RCytoscape
updated 11.1 years ago by
Paul Shannon
▴ 470 • written 11.1 years ago by
Christopher T Gregg
▴ 210
0
votes
1
reply
1.4k
views
bug in graph::addNode() w/ graph::edgeData()
graph
graph
updated 11.1 years ago by
Robert Castelo
★ 3.4k • written 11.1 years ago by
Paul Shannon
▴ 750
0
votes
2
replies
1.6k
views
bug in graph::addNode() w/ graph::edgeData()
graph
graph
updated 11.2 years ago by
Paul Shannon
▴ 750 • written 11.2 years ago by
Robert Castelo
★ 3.4k
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Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.0k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
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• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
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![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
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