Showing : Genesis • reset
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Conditional analysis
GENESIS
7 months ago SuperDad • 0
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1
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486
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GENESIS: error in crossprod
GENESIS
10 months ago Stephanie M. Gogarten ▴ 890
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2
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786
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GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 13 months ago by ▴ 890 • written 13 months ago by • 0
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2
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657
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SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 14 months ago by ▴ 890 • written 14 months ago by • 0
1
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1
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821
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HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 14 months ago by 67k • written 14 months ago by ▴ 10
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526
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How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
14 months ago mailtoshivam13 • 0
2
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5
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1.1k
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assocTestSingle output with GxE
GENESIS
updated 18 months ago by ▴ 890 • written 18 months ago by • 0
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1
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588
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Reference categories for factors
assocTestSingle GENESIS
written 23 months ago by • 0
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2
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943
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
2.2 years ago Monica • 0
1
vote
2
replies
4.8k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 3.9 years ago by • 0 • written 5.1 years ago by • 0
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1
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1.0k
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Approximations to Est and Est.SE in GENESIS
GENESIS
4.1 years ago Stephanie M. Gogarten ▴ 890
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0
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838
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X chromosome analyses for males in GENESIS
GENESIS
4.1 years ago Stephanie M. Gogarten ▴ 890
0
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3
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1.7k
views
Alternate allele for GENESIS?
genesis effect allele association analysis
updated 4.4 years ago by ▴ 890 • written 4.4 years ago by • 0
0
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1
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969
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using GENESIS R package with non-human species
genesis gwastools
4.4 years ago Stephanie M. Gogarten ▴ 890
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2
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1.1k
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Association testing model in GENESIS
genesis
updated 4.5 years ago by ▴ 890 • written 4.5 years ago by • 0
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1
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1.4k
views
GENESIS multiple gds files
genesis gds SeqVarData
updated 4.6 years ago by ▴ 890 • written 4.6 years ago by • 0
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8
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1.9k
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Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.9 years ago alipka ▴ 10
2
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1
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841
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 4.9 years ago by ▴ 890 • written 4.9 years ago by ▴ 10
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0
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1.0k
views
Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
5.1 years ago astridite • 0
2
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1
reply
989
views
Why did the Wald test disappear from GENESIS?
genesis
5.1 years ago Stephanie M. Gogarten ▴ 890
1
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3
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1.5k
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Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
5.2 years ago Corey.Cox • 0
1
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1
reply
1.2k
views
Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 5.2 years ago by ▴ 890 • written 5.2 years ago by ▴ 10
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6
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1.8k
views
Interpreting the output of score test using GENESIS
genesis output score
updated 5.2 years ago by ▴ 890 • written 5.2 years ago by ▴ 10
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4
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1.3k
views
Sporadic missingness with admixmmap
genesis admixmap
updated 5.3 years ago by ▴ 890 • written 5.3 years ago by • 0
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3
replies
2.1k
views
Can't install Genesis
Genesis Installation
updated 5.4 years ago by ★ 6.6k • written 5.4 years ago by ▴ 10
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3
replies
1.4k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.4 years ago by ▴ 70 • written 5.4 years ago by • 0
6
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11
replies
3.2k
views
Genesis: doubts with admixMAPMM
genesis admixmap
updated 5.7 years ago by ▴ 890 • written 5.7 years ago by • 0
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1
reply
1.1k
views
betas for binary outcome
genesis
5.8 years ago Stephanie M. Gogarten ▴ 890
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13
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2.8k
views
GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 5.8 years ago by ▴ 890 • written 5.8 years ago by • 0
4
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2
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2.0k
views
Imputed dosages in GENESIS
genesis gwastools seqarray
6.2 years ago • updated 5.9 years ago Stephanie M. Gogarten ▴ 890
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1
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1.1k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.9 years ago naglemi ▴ 10
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1
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1.1k
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Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.1 years ago by ▴ 70 • written 6.1 years ago by ▴ 10
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1
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1.1k
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 6.2 years ago by ▴ 890 • written 6.2 years ago by • 0
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1
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1.1k
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Using previously calculated PCs in GENESIS
genesis snprelate
6.3 years ago Stephanie M. Gogarten ▴ 890
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1
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1.2k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.3 years ago by ▴ 30 • written 6.3 years ago by ▴ 10
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1
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922
views
selecting SNPs and samples in GENESIS
genesis
6.4 years ago Stephanie M. Gogarten ▴ 890
0
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3
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1.4k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ▴ 10
3
votes
4
replies
1.7k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ▴ 10
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8
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2.0k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
6.7 years ago GENOMIC_region • 0
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7
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2.1k
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GENESIS: king2mat: subscript out of bounds
genesis
6.7 years ago Stephanie M. Gogarten ▴ 890
40 results • Page 1 of 1
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Comment: RnBeads::combine() - error? by Urotree • 0
pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…
Comment: RnBeads::combine() - error? by Urotree • 0
![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…
Comment: RnBeads::combine() - error? by Urotree • 0
rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …
Answer: How to increase font for gene name and increase arrow size for GVIZ's ( UcscTra by ming • 0
`fontsize` for title font size, `fontsize.group` for gene symbol font size tx.track <- GeneRegionTrack(hg38.gtf, …
Answer: How do I fix an odd voom plot in a combined dataset? by Gordon Smyth 52k
voom is a DE analysis method rather than a normalization method. voom expects the design matrix to be the same complete design matrix that …
Votes
Answer: enrichGOgradient color change
How do I fix an odd voom plot in a combined dataset?
Answer: Warning message when running limma with covariates
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
Awards • All
Popular Question to Gordon Smyth 52k
Popular Question to James W. MacDonald 67k
Popular Question to Chris ▴ 20
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to shepherl 4.1k
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