Showing : Genesis • reset
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Conditional analysis
GENESIS
8 months ago SuperDad • 0
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1
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516
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GENESIS: error in crossprod
GENESIS
11 months ago Stephanie M. Gogarten ▴ 890
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2
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831
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GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 14 months ago by ▴ 890 • written 14 months ago by • 0
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2
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693
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SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 15 months ago by ▴ 890 • written 15 months ago by • 0
1
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1
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859
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HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 15 months ago by 67k • written 15 months ago by ▴ 10
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543
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How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
15 months ago mailtoshivam13 • 0
2
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5
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1.1k
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assocTestSingle output with GxE
GENESIS
updated 19 months ago by ▴ 890 • written 19 months ago by • 0
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1
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599
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Reference categories for factors
assocTestSingle GENESIS
written 24 months ago by • 0
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2
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975
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
2.3 years ago Monica • 0
1
vote
2
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4.9k
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Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.0 years ago by • 0 • written 5.2 years ago by • 0
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1
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1.1k
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Approximations to Est and Est.SE in GENESIS
GENESIS
4.2 years ago Stephanie M. Gogarten ▴ 890
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0
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859
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X chromosome analyses for males in GENESIS
GENESIS
4.2 years ago Stephanie M. Gogarten ▴ 890
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3
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1.8k
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Alternate allele for GENESIS?
genesis effect allele association analysis
updated 4.5 years ago by ▴ 890 • written 4.5 years ago by • 0
0
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1
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988
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using GENESIS R package with non-human species
genesis gwastools
4.5 years ago Stephanie M. Gogarten ▴ 890
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2
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1.1k
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Association testing model in GENESIS
genesis
updated 4.6 years ago by ▴ 890 • written 4.6 years ago by • 0
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1
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1.5k
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GENESIS multiple gds files
genesis gds SeqVarData
updated 4.6 years ago by ▴ 890 • written 4.7 years ago by • 0
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8
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1.9k
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Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
5.0 years ago alipka ▴ 10
2
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1
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868
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Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 5.0 years ago by ▴ 890 • written 5.0 years ago by ▴ 10
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0
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1.0k
views
Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
5.2 years ago astridite • 0
2
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1
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1.0k
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Why did the Wald test disappear from GENESIS?
genesis
5.2 years ago Stephanie M. Gogarten ▴ 890
1
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3
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1.6k
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Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
5.3 years ago Corey.Cox • 0
1
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1
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1.2k
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Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 5.3 years ago by ▴ 890 • written 5.3 years ago by ▴ 10
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6
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1.8k
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Interpreting the output of score test using GENESIS
genesis output score
updated 5.3 years ago by ▴ 890 • written 5.3 years ago by ▴ 10
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4
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1.3k
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Sporadic missingness with admixmmap
genesis admixmap
updated 5.4 years ago by ▴ 890 • written 5.4 years ago by • 0
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3
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2.2k
views
Can't install Genesis
Genesis Installation
updated 5.5 years ago by ★ 6.6k • written 5.5 years ago by ▴ 10
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3
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1.5k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.5 years ago by ▴ 70 • written 5.5 years ago by • 0
6
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11
replies
3.2k
views
Genesis: doubts with admixMAPMM
genesis admixmap
updated 5.8 years ago by ▴ 890 • written 5.8 years ago by • 0
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1
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1.1k
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betas for binary outcome
genesis
5.9 years ago Stephanie M. Gogarten ▴ 890
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13
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2.8k
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GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 5.9 years ago by ▴ 890 • written 5.9 years ago by • 0
4
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2
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2.1k
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Imputed dosages in GENESIS
genesis gwastools seqarray
6.3 years ago • updated 6.0 years ago Stephanie M. Gogarten ▴ 890
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1
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1.2k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.0 years ago naglemi ▴ 10
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1
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1.2k
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Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.2 years ago by ▴ 70 • written 6.2 years ago by ▴ 10
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1
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1.2k
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GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 6.3 years ago by ▴ 890 • written 6.3 years ago by • 0
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1
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1.1k
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Using previously calculated PCs in GENESIS
genesis snprelate
6.4 years ago Stephanie M. Gogarten ▴ 890
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1
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1.2k
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Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.4 years ago by ▴ 30 • written 6.4 years ago by ▴ 10
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1
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948
views
selecting SNPs and samples in GENESIS
genesis
6.5 years ago Stephanie M. Gogarten ▴ 890
0
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3
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1.5k
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GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.5 years ago by ▴ 70 • written 6.5 years ago by ▴ 10
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4
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1.7k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.5 years ago by ▴ 70 • written 6.5 years ago by ▴ 10
2
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8
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2.0k
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GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
6.8 years ago GENOMIC_region • 0
0
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7
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2.1k
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GENESIS: king2mat: subscript out of bounds
genesis
6.8 years ago Stephanie M. Gogarten ▴ 890
40 results • Page 1 of 1
Recent ...
Replies
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 67k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by a.alkema • 0
Oh, that's silly - thanks, will do!
Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by James W. MacDonald 67k
This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…
Comment: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…
Votes
Comment: Unused arguments error without used arguments in GSVA?
Answer: Reducing and aggregating GRanges with gaps using plyranges
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
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