Bioconductor GeneOverlap

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GeneOverlap heatmaps

6 months ago Johanna • 0

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GeneOverlap multiple figures heatmap

updated 4.9 years ago by James W. MacDonald 67k • written 4.9 years ago by C T ▴ 140

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genomicranges geneoverlap findoverlaps

updated 8.7 years ago by Michael Lawrence ★ 11k • written 8.7 years ago by yao.h.1988 • 0

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GeneOverlap DEGgenes affymetrixchip bioconductor

9.7 years ago svlachavas ▴ 840

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Answer: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Your post title is misleading. You have no problem whatsoever generating the `TxDb`, the problem is using it with `gDNAx`, which attempts t…

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

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A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

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Scholar to James W. MacDonald 67k