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GeneOverlap
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Error in drawHeatmap function
GeneOverlap
heatmaps
10 months ago
Johanna
• 0
0
votes
3
replies
1.0k
views
how to draw multiple heatmap from GeneOverlap
GeneOverlap
multiple figures
heatmap
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
C T
▴ 140
0
votes
6
replies
2.1k
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Is that an efficient way to find the overlapped , upstream and downstream genes for a bunch of genes
genomicranges
geneoverlap
findoverlaps
updated 9.1 years ago by
Michael Lawrence
★ 11k • written 9.1 years ago by
yao.h.1988
• 0
0
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0
replies
1.4k
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Correst use of GeneOverlap R Package
GeneOverlap
DEGgenes
affymetrixchip
bioconductor
10.1 years ago
svlachavas
▴ 840
4 results • Page
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Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2
by
cold.wolverine.arku
• 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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