Bioconductor GeneOntology

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597

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 7 months ago by Michael Love 42k • written 7 months ago by Filipe • 0

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2.1k

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rnaseq rnaseqGene geneontology

updated 22 months ago by James W. MacDonald 67k • written 22 months ago by acram • 0

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1.0k

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microRNA gene RNASeqRData edgeR geneontology

23 months ago faiza • 0

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654

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GO GeneOntology LocusIDtogeneIDconversion

24 months ago BioinFo.X • 0

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2.2k

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Annotation GeneOntology topGO GO

updated 2.3 years ago by James W. MacDonald 67k • written 2.3 years ago by Raito92 ▴ 60

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1.0k

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GOstats Go.db GeneOntology

3.5 years ago MOHAMMAD • 0

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1.0k

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GO.db Annotation Clusterprofile GeneOntology

updated 3.6 years ago by Basti ▴ 780 • written 3.6 years ago by MOHAMMAD • 0

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1.6k

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topGO enrichmentanalysis geneontology

updated 3.6 years ago by Lluís Revilla Sancho ▴ 750 • written 3.6 years ago by Aini • 0

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7.7k

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clusterprofiler geneontology

updated 6.9 years ago by thokall ▴ 160 • written 6.9 years ago by giuseppe0525 • 0

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1.1k

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geneontology R go semantic similarity

updated 7.8 years ago by Valerie Obenchain ★ 6.8k • written 7.8 years ago by manasa22.reddy • 0

10 results • Page 1 of 1

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Comment: How should I run ssGSEA Hallmark Enrichment Analysis? by Ginny • 0

I think the other side of this question is that the non protein coding genes would be in the "background", they would influence the ranking…

Comment: ISO a solution to rank-order introns by transcript by James W. MacDonald 67k

There's an error in the last line. Note that `sapply(lengths(z), seq_len)` will return a `list` because the lengths vary. We need a vector,…

Comment: BiomaRt - improved access to Ensembl ? by Mike Smith ★ 6.5k

Why do you want to use `useMart()` rather than `useEnsembl()`? They are essentially the same (`useEnsembl()` will eventually call `useMart(…

Comment: Installing Bioconductor packages in Docker by devarti.mahakalkar • 0

I have installed BiocManager on my base image rather than having it as base image. RUN Rscript -e "install.packages('BiocManager', re…

Comment: Meta-analysis on RNA-seq data sets by Travis • 0

Thank you for your suggestions and explanation of your approach!

Votes

Answer: ISO a solution to rank-order introns by transcript

Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c

Answer: addPatternDensity in 'qsea' takes too much time

Awards • All

Popular Question to Robert Castelo ★ 3.4k

Scholar to James W. MacDonald 67k