Bioconductor Galaxy

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Conference Community Galaxy GBCC2025 Bioconductor

5 months ago Maria Doyle ▴ 100

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DESeq2 Galaxy pca

updated 2.1 years ago by swbarnes2 ★ 1.4k • written 2.1 years ago by mbxdn1 • 0

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DESeq2 RNASeq Galaxy

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by István • 0

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ballgown StringTie galaxy rnaseq

updated 2.8 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by lakshmi9c • 0

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deseq2 galaxy

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by mikelirastor • 0

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deseq2 galaxy

8.0 years ago gkuffel ▴ 10

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bioconductor next-generation sequencing galaxy

updated 8.3 years ago by Lucas Schiffer ▴ 240 • written 8.3 years ago by efraim.culfa • 0

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rnaseq galaxy deseq2

updated 9.0 years ago by Michael Love 43k • written 9.1 years ago by Marcelo Pereira ▴ 70

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DESeq2 Galaxy

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by Marcelo Pereira ▴ 70

9 results • Page 1 of 1

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Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

Underpowerment and notable noise/variability, that's the answer.

Comment: DESeq - help with pair wise comparisons by ATpoint ★ 4.8k

It's exactly this, no? https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#group-specific-condition-effect…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Sorry for the repetitive questions! I'm actually just trying to understand it better so that I can explain to the wet lab biologists in my …

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> Would you advice against running deseq separately for each comparison? You're reducing power even more. Look, since you appear a bit "de…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for the quick reply. Rep 1 is lower than rep 2 in only one group (V_CD45), is this sufficient to affect the results even if I inc…

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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

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