Bioconductor Galaxy

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211

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Conference Community Galaxy GBCC2025 Bioconductor

3 months ago Maria Doyle ▴ 100

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1.2k

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DESeq2 Galaxy pca

updated 23 months ago by swbarnes2 ★ 1.4k • written 23 months ago by mbxdn1 • 0

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1.1k

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DESeq2 RNASeq Galaxy

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by István • 0

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1.9k

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ballgown StringTie galaxy rnaseq

updated 2.6 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by lakshmi9c • 0

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643

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deseq2 galaxy

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by mikelirastor • 0

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1.6k

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deseq2 galaxy

7.8 years ago gkuffel ▴ 10

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1.6k

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bioconductor next-generation sequencing galaxy

updated 8.1 years ago by Lucas Schiffer ▴ 240 • written 8.1 years ago by efraim.culfa • 0

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4.5k

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rnaseq galaxy deseq2

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by Marcelo Pereira ▴ 70

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1.4k

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DESeq2 Galaxy

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by Marcelo Pereira ▴ 70

9 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k