Showing : GViz • reset
0
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256
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Gviz and custom database
Gviz
updated 4 weeks ago by 66k • written 4 weeks ago by • 0
1
vote
2
replies
1.1k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 10 weeks ago by ▴ 180 • written 16 months ago by ▴ 10
0
votes
1
reply
251
views
GC content track on GVIZ
Gviz
updated 4 months ago by 66k • written 4 months ago by • 0
1
vote
3
replies
1.5k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 7 months ago by ▴ 730 • written 3.2 years ago by • 0
0
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0
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421
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
8 months ago dbsgtk • 0
1
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0
replies
525
views
Gviz : UcscTrack
rtracklayer UCSC Gviz
8 months ago yujin ▴ 10
1
vote
3
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674
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 8 months ago by 16k • written 8 months ago by ▴ 10
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5
replies
1.9k
views
Gviz: UcscTrack and "GC Percent" information
Gviz coMET
19 months ago • updated 9 months ago Daniel E. Weeks ▴ 30
0
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3
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905
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
0
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2
replies
592
views
how to add annotation on individual track
Gviz
updated 13 months ago by ▴ 730 • written 13 months ago by ▴ 50
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0
replies
440
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
16 months ago Vinicius Henrique da Silva ▴ 40
0
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0
replies
690
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
16 months ago gilliangoobie • 0
0
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2
replies
1.3k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi Gviz
updated 23 months ago by 66k • written 23 months ago by • 0
0
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1
reply
1.0k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
24 months ago • updated 23 months ago rohitsatyam102 ▴ 20
2
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1
reply
1.5k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 2.1 years ago by 66k • written 2.1 years ago by • 0
1
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3
replies
2.0k
views
GVIZ giving error with loading hg38 genome
R Gviz
2.2 years ago RUser743 • 0
1
vote
2
replies
1.5k
views
Gviz and datatracks
Gviz
updated 2.3 years ago by • 0 • written 2.5 years ago by ▴ 670
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votes
0
replies
578
views
Color of 2nd exon
GViz
2.4 years ago underscore • 0
1
vote
1
reply
929
views
Gviz DataTrack data transformation on the fly
aggregation Gviz DataTrack
updated 2.5 years ago by ▴ 730 • written 2.5 years ago by ▴ 10
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0
replies
651
views
Modify y axis or add second y axis in Gviz
OverlayTrack Gviz
2.5 years ago Robert ▴ 10
4
votes
4
replies
2.3k
views
Gviz: ylim of the AlignmentsTrack
gviz gviz-package
updated 2.5 years ago by ▴ 120 • written 5.8 years ago by ▴ 10
0
votes
0
replies
923
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.6 years ago Ahdee ▴ 50
0
votes
0
replies
630
views
Y axis Data Track GVIZ
GVIZ
2.7 years ago • updated 2.6 years ago rbenel ▴ 40
1
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1
reply
1.6k
views
GVIZ on R not loading mm10 from UCSC
Gviz
2.7 years ago RUser743 • 0
0
votes
3
replies
975
views
Details AnnotationTrack swap densityplot and connectors
Gviz
2.8 years ago Hartorthereal • 0
1
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3
replies
1.3k
views
Gradient dotplot
Gviz
2.8 years ago sophieagger • 0
0
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0
replies
875
views
One read per line and other ordering of reads in Gviz
Gviz
2.8 years ago pillailab1 • 0
0
votes
4
replies
1.2k
views
window parameter in DataTrack function with a single sample
Gviz
2.8 years ago • updated 2.7 years ago rbenel ▴ 40
0
votes
1
reply
1.1k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 2.9 years ago by 66k • written 2.9 years ago by ▴ 10
0
votes
4
replies
1.3k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 17 months ago by 66k • written 2.9 years ago by • 0
1
vote
3
replies
1.2k
views
Can't produce a generegiontrack from my txdb anymore
gviz GenomicFeatures
2.9 years ago A.J. ▴ 20
0
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0
replies
902
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
3.1 years ago gdeniz • 0
0
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0
replies
806
views
Gviz - Fixed width of title panel on left
Gviz
3.1 years ago rheery • 0
0
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0
replies
707
views
Gviz: set colors for UTRs
plot color Gviz utr
3.2 years ago ginlucks • 0
0
votes
3
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1.1k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 3.2 years ago by 66k • written 3.2 years ago by • 0
0
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0
replies
1.0k
views
Gviz import lor reads from bam file
Gviz longreads
3.3 years ago ginlucks • 0
0
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1
reply
798
views
two tracks have the same axis
plot Gviz
3.6 years ago 腾 • 0
0
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2
replies
1.1k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
3.7 years ago Vaibhav • 0
0
votes
2
replies
1.1k
views
Gviz vertical text labels
Gviz
updated 3.7 years ago by 66k • written 3.7 years ago by ▴ 90
0
votes
1
reply
923
views
Gviz, keeping strand information while zooming in
Gviz strand
3.7 years ago svenbioinf • 0
2
votes
2
replies
1.3k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 3.8 years ago by 66k • written 3.8 years ago by ▴ 10
0
votes
1
reply
959
views
Gviz package for plotting DMRs
Gviz DMRs
updated 3.9 years ago by ▴ 730 • written 4.0 years ago by • 0
0
votes
3
replies
2.2k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
4.0 years ago roman.hillje • 0
1
vote
3
replies
839
views
Highlight uniq transcripts in Gviz
Gviz
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
votes
2
replies
1.1k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 4.1 years ago by ▴ 730 • written 4.1 years ago by • 0
0
votes
2
replies
1.1k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz plotTracks
updated 4.3 years ago by ▴ 730 • written 4.4 years ago by • 0
0
votes
4
replies
1.1k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 4.4 years ago by ▴ 140 • written 4.4 years ago by ▴ 30
0
votes
1
reply
912
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 4.4 years ago by ▴ 730 • written 5.0 years ago by ▴ 10
1
vote
5
replies
1.1k
views
Plotting DMRs (Differentially Methylated Regions) using Gviz package in R
Gviz
updated 4.4 years ago by 66k • written 4.4 years ago by ▴ 10
0
votes
2
replies
898
views
BioMart webservice returned an invalid result
gviz biomart
4.4 years ago adrian86 • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results by alserg ▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results by alserg ▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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