Showing : GSVA • reset
4
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5
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310
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
11 days ago • updated 1 day ago Chris ▴ 10
0
votes
0
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92
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Could we detect difference at pathway level but not significant different at gene level?
GSVA
17 days ago Chris ▴ 10
1
vote
2
replies
693
views
GSVA error
GSVA
4 weeks ago Alex • 0
1
vote
6
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521
views
GSVA on separate healthy and disease datasets
GSVA
updated 5 weeks ago by 65k • written 5 weeks ago by ▴ 60
1
vote
1
reply
690
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea GSVA biotype proteincoding msigdb
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 20
0
votes
1
reply
417
views
GSVA exceeds 1
GSVA
updated 8 months ago by ★ 3.3k • written 8 months ago by • 0
4
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2
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1.3k
views
Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA RNASeq limma
updated 10 months ago by 50k • written 10 months ago by ▴ 10
2
votes
0
replies
1.1k
views
How to aggregate pseudobulks: Normalization & Log-Transformation
pseudobulk scRNAseq GSVA
13 months ago Tadeoye ▴ 20
0
votes
2
replies
804
views
GSVA with and without absolute scaling method
GSVA
13 months ago arashdeep singh • 0
2
votes
4
replies
1.4k
views
Failed to install Biobase
GSVA Biobase
updated 13 months ago by 65k • written 13 months ago by • 0
2
votes
6
replies
1.7k
views
How can I avoid artifacts in gene set/pathway scoring by UCell and similar algorithms?
escape UCell GSVA
updated 5 months ago by • 0 • written 15 months ago by • 0
0
votes
3
replies
764
views
GSVA: Error loading interactive web app
igsva GSVA
updated 15 months ago by ★ 3.3k • written 15 months ago by ▴ 40
0
votes
3
replies
1.1k
views
GSVA results interpretation
GSVA
updated 16 months ago by ★ 3.3k • written 16 months ago by • 0
0
votes
0
replies
751
views
Trying to use a NanoString expression set with batch effects to do GSVA
GSVA Normalization BatchEffect GSVAdata NanoString
16 months ago Zhijie • 0
0
votes
0
replies
793
views
Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
18 months ago Robert Castelo ★ 3.3k
1
vote
5
replies
1.5k
views
'combined score' calculation with singscore vs gsva
singscore GSVA
18 months ago rocanja ▴ 60
5
votes
9
replies
1.9k
views
GSVA perfomed on RSEM Expected Count data
GSVA RNA-Seq RSEM Expected_Count
22 months ago • updated 21 months ago Yang Shi ▴ 10
3
votes
4
replies
2.1k
views
Why Negative value from GSVA
GSVA RNASeq edgeR
22 months ago Yang Shi ▴ 10
0
votes
3
replies
1.9k
views
Should 0 values for gene counts be removed prior to ssGSEA/GSVA analysis?
GSEA GSVA
updated 18 months ago by ▴ 60 • written 22 months ago by • 0
2
votes
2
replies
1.4k
views
How to run GSVA with partially NA genes
GSVA
24 months ago blakebowen • 0
1
vote
3
replies
5.5k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.1 years ago by ★ 3.3k • written 2.1 years ago by • 0
1
vote
1
reply
1.2k
views
Cleaning GeneSets from GSEA
msigdb GSEABase GSVA
updated 2.1 years ago by ★ 3.3k • written 2.1 years ago by • 0
0
votes
1
reply
805
views
Running PLAGE gets killed
GSVA SingleCellData
updated 2.2 years ago by ★ 3.3k • written 2.2 years ago by • 0
0
votes
1
reply
1.3k
views
GSVA: for a pathway, can enrichment scores of all samples be negative?
GSVAdata GSVA
updated 2.2 years ago by ★ 3.3k • written 2.2 years ago by • 0
0
votes
1
reply
1.2k
views
GSVA package normalization on gene-length ?
GSVA
updated 2.4 years ago by ★ 3.3k • written 2.4 years ago by • 0
1
vote
2
replies
1.1k
views
Can GSVA be applied in several sample type and each type only have two replicates ?
GSVA
2.7 years ago • updated 23 months ago Guandong Shang ▴ 40
2
votes
2
replies
846
views
Turn of GSVA filtering for method ssGSEA
GSVA
2.9 years ago k.vitting.seerup ▴ 120
2
votes
2
replies
2.0k
views
Questions regard to GSVA and Limma
limma GSVA
2.9 years ago Chenxi • 0
2
votes
7
replies
1.8k
views
Issue with GSVA using dgCMatrix
GSVA
updated 10 weeks ago by ▴ 10 • written 2.9 years ago by • 0
0
votes
1
reply
3.1k
views
GSVA Problem
GSVA
updated 3.0 years ago by ★ 3.3k • written 3.0 years ago by • 0
6
votes
4
replies
1.8k
views
Discrepancy in GSVA for Nanostring when using normalized counts vs rlog as input
GSVA
3.3 years ago hanyin.wang88 ▴ 10
0
votes
8
replies
5.7k
views
GSVA Error in .mapGeneSetsToFeatures(mapped.gset.idx.list, rownames(expr))
GSVA
updated 20 months ago by ★ 3.3k • written 3.3 years ago by • 0
2
votes
3
replies
1.8k
views
Selecting or not selecting samples before running GSVA
GSVA
updated 3.4 years ago by ★ 3.3k • written 3.4 years ago by ▴ 20
0
votes
3
replies
1.4k
views
GSVA on gene sets with 2 genes
GSVA gene sets RNA-seq
updated 3.6 years ago by ★ 3.3k • written 3.6 years ago by ▴ 70
1
vote
11
replies
2.7k
views
Error in .local(expr, gset.idx.list, ...) : Please install the nnotation package hgu95a, but I can't install hgu95a
GSVA
updated 2.8 years ago by ▴ 10 • written 3.7 years ago by • 0
0
votes
1
reply
1.2k
views
Extract GSVA gene rank matrix
gsva
updated 3.8 years ago by ★ 3.3k • written 3.8 years ago by • 0
2
votes
1
reply
2.1k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea ssgsea gsva pathways
updated 3.8 years ago by ★ 3.3k • written 3.8 years ago by ▴ 50
2
votes
2
replies
1.9k
views
Using GSVA All the pathway score are same
GSVA scRNA-seq data
updated 3.9 years ago by ★ 3.3k • written 3.9 years ago by • 0
2
votes
10
replies
3.7k
views
How to compare two or more GSVA outputs, when it is not possible to run GSVA at once
gsva
updated 3.9 years ago by ★ 3.3k • written 3.9 years ago by ▴ 20
0
votes
1
reply
1.5k
views
GSVA on integrated/batch corrected scRNAseq data
GSVA Job
updated 4.0 years ago by ★ 3.3k • written 4.0 years ago by • 0
1
vote
12
replies
2.4k
views
GSVA (running group samples separately)
GSVA
updated 4.0 years ago by ★ 3.3k • written 4.0 years ago by ▴ 30
7
votes
11
replies
2.4k
views
Updating Gene Annotation in GeneSetCollection {GSEABase}
GSEABase annotation gsea gsva GeneSetCollection
updated 4.0 years ago by ★ 3.3k • written 4.0 years ago by ▴ 60
1
vote
1
reply
1.7k
views
Method and kcdf arguments in gsva package
GSVA
updated 4.1 years ago by ★ 3.3k • written 4.1 years ago by ▴ 10
1
vote
4
replies
5.0k
views
GSVA on RNAseq data
gsva rnaseq
updated 5.1 years ago by ★ 3.3k • written 5.1 years ago by ▴ 60
0
votes
1
reply
959
views
GSVA lots of positive values, is this expected behavior?
gsva
updated 5.1 years ago by ★ 3.3k • written 5.1 years ago by ▴ 10
5
votes
4
replies
3.1k
views
Differential expression on GSVA scores using LIMMA
limma gsva
updated 5.1 years ago by ★ 3.3k • written 5.1 years ago by ▴ 60
2
votes
4
replies
2.5k
views
Are singscore scores comparable between gene sets?
singscore GSVA GSEA subtypes geneset
updated 3.4 years ago by • 0 • written 5.2 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Tumor subtype classification when genes of gene set are missing from samples - GSVA approach
GSVA geneset RNASeq TCGA subtypes
5.4 years ago Pietro ▴ 40
1
vote
1
reply
1.3k
views
PLAGE method fails in GSVA if an overlap between gene sets and genes in expressions is less than two
gsva plage differential expression gene set enrichment
5.4 years ago krassowski.michal ▴ 40
2
votes
1
reply
1.2k
views
GSVA tutorial brainTxDb oligodendrocytic_dn neuronal_dn are same genesets
GSVA tutorial
updated 5.7 years ago by ★ 3.3k • written 5.7 years ago by ▴ 10
50 results • Page 1 of 1
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
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