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GRange
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0
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750
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
5.1 years ago
mawusse.agbessi
• 0
2
votes
0
replies
993
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
5.5 years ago
rmash
▴ 20
0
votes
1
reply
779
views
Multi-sample Heatmap from GRange
GRange
updated 6.4 years ago by
James W. MacDonald
68k • written 6.4 years ago by
Danny
• 0
0
votes
3
replies
3.1k
views
Selecting columns form a list of grange objects
r
granges
grange
6.6 years ago
g.k
• 0
1
vote
3
replies
1.3k
views
GRange and bam files
bioconductor
Grange
7.0 years ago • updated 6.9 years ago
Merlin
▴ 10
0
votes
1
reply
1.2k
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
7.0 years ago
g.k
• 0
1
vote
2
replies
2.0k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 7.1 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
g.k
• 0
3
votes
4
replies
6.0k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.8k
views
Extract GRanges for gene data frame
GRange
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
mdeea123
▴ 10
9
votes
21
replies
13k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 9.3 years ago by
Ou, Jianhong
★ 1.3k • written 9.3 years ago by
tangming2005
▴ 200
0
votes
1
reply
1.2k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 10.2 years ago by
Valerie Obenchain
★ 6.8k • written 10.2 years ago by
cidster12
• 0
4
votes
2
replies
1.5k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
10.4 years ago
Bogdan
▴ 670
12 results • Page
1 of 1
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Comment: DeSeq Strategies for run to run Replication
by
Michael Love
43k
You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…
Answer: Feature Counts - potential bug with outfile.jcounts
by
Wei Shi
★ 3.6k
We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…
Comment: How to perform batch correction on scRNA-seq with confounding plate effects?
by
瑞宏
• 0
I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…
Comment: European Bioconductor Conference 2023 planning
by
ht
• 0
Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…
Votes
C: Annotating HTA 2.0 genes
C: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
Answer: Feature Counts - potential bug with outfile.jcounts
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