Bioconductor GOTHiC

Showing : GOTHiC • reset

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1.8k

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diffhic gothic hicup hic-c hic

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by mictadlo ▴ 10

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hic diffhic gothic hicup hic-c

6.1 years ago • updated 6.0 years ago mictadlo ▴ 10

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GOTHiC

6.2 years ago alongalor ▴ 10

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921

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gothic

8.5 years ago manduchi ▴ 10

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1.8k

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GOTHiC hic

9.3 years ago Nathan Sheffield ▴ 10

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2.8k

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HiTC gothic diffhic HiC

9.3 years ago Bogdan ▴ 670

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bioconductor gothic R

updated 9.5 years ago by Vicky_Tche • 0 • written 9.6 years ago by sv380 • 0

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GOTHiC software error

9.7 years ago bef22 • 0

8 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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