Showing : GOSemSim • reset
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GOSemSim - mgeneSim weird output
GOSemSim similarity
updated 11 months ago by ▴ 730 • written 11 months ago by • 0
1
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1
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704
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 16 months ago by ▴ 730 • written 16 months ago by ▴ 10
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2
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1.7k
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Can't install GO.db
GOexpress GO.db GOSemSim
19 months ago Chruut • 0
0
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0
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749
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.4 years ago Amandeep • 0
0
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3
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1.9k
views
using the goana function from edgeR
RNASeq edgeR GO GOSemSim
updated 2.4 years ago by 51k • written 2.4 years ago by ▴ 90
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1
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1.1k
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is there an R library to compute semantic similarity in SNOMED ontology?
goSemSim snomed semantic similarity
updated 3.8 years ago by 6.7k • written 3.8 years ago by • 0
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1
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1.0k
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GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim makeOrgPackage godata
updated 4.0 years ago by 66k • written 4.0 years ago by • 0
0
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1
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1.8k
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GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.1 years ago Jenny Drnevich ★ 2.0k
1
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1
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1.4k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 4.2 years ago by ★ 3.9k • written 4.2 years ago by • 0
1
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3
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1.2k
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Meaning of NA in geneSim result using GOSemSim
GOSemSim Dnet
5.0 years ago helenlong1 • 0
0
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1
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861
views
Using GoSemSim with other Ontologies
GOSemSim
updated 5.0 years ago by ▴ 730 • written 5.0 years ago by • 0
3
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12
replies
2.7k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.3 years ago sergi.picart ▴ 20
0
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1
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996
views
Gene similarity by GOSemSim
gosemsim mgenesim
5.5 years ago athirak1986 • 0
0
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0
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1.0k
views
GOSemSim - slow for BP terms
gosemsim go enrichment go semantic similarity
5.6 years ago nooshin ▴ 300
0
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2
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1.2k
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(GOSemSim package) secondary GO terms generating NA values
gosemsim
updated 5.6 years ago by ★ 1.2k • written 5.6 years ago by • 0
2
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2
replies
1.8k
views
Error: could not find function "godata"
gosemsim
6.0 years ago anton.kratz ▴ 60
0
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1
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1.2k
views
GO similarity by GOSemSim
gosemsim similarity
6.0 years ago ahatashkar • 0
8
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5
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2.4k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
GOSemSim gosemsim gene ontology
updated 6.4 years ago by • 0 • written 6.4 years ago by ▴ 60
0
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1
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1.4k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.3 years ago by ▴ 730 • written 8.7 years ago by ▴ 10
1
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12
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3.5k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim Gene ontology semantic similarity across species
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by ▴ 10
0
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5
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1.6k
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Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 7.8 years ago by ★ 1.2k • written 7.8 years ago by ▴ 10
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4
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1.5k
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problem of GOSemSim R package operation geneSim()
gosemsim
8.2 years ago bnembarekmarwa • 0
1
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1
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1.3k
views
GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim mgeneSim
updated 8.2 years ago by ★ 1.2k • written 8.2 years ago by • 0
0
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9
replies
3.0k
views
expired SQLiteConnection in GoSemSim package.
gene ontology GOSemsim
updated 8.9 years ago by ▴ 10 • written 9.2 years ago by • 0
0
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4
replies
2.0k
views
GOterm semantic similarity with non-reference organism
gosemsim go gene ontology
9.2 years ago cpcantalapiedra • 0
1
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2
replies
1.9k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.4 years ago by ★ 1.2k • written 9.4 years ago by ▴ 10
0
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0
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1.7k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
9.6 years ago Guangchuang Yu ★ 1.2k
0
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1
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1.5k
views
GOSemSim function, clusterSim throws expired SQLiteConnection error
GO GOSemSim GO GOSemSim
updated 10.6 years ago by ★ 1.2k • written 10.6 years ago by ★ 13k
0
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0
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1.3k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.8 years ago Guangchuang Yu ★ 1.2k
0
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0
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939
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.9 years ago Guest User ★ 13k
0
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1
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1.4k
views
(pack: GOSemSim) NA semantic similarities between gene clusters
GO SemSim GOSemSim GO SemSim GOSemSim
updated 11.9 years ago by ★ 1.2k • written 11.9 years ago by ★ 13k
0
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1
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1.2k
views
GOSemSim comparison between species
Yeast GOSemSim Yeast GOSemSim
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by ▴ 10
0
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1
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1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.8 years ago by ★ 7.2k • written 14.8 years ago by ▴ 20
33 results • Page 1 of 1
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Answer: Ranking the GSEA Results by Michael Love 42k
Some posts on this topic: https://www.google.com/search?q=site%3Asupport.bioconductor.org+GSEA+ranking+DESeq2
Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR by Gordon Smyth 51k
edgeR allows observation specific offsets (as already pointed out), although I am not confident that would be a reliable solution to your p…
Comment: Research Project - Expanding search funtionality on the GEO database by gallantk5 • 0
Thank you I will take a look at those !
Comment: Research Project - Expanding search funtionality on the GEO database by gallantk5 • 0
I will send you an email and talk to my advisor about setting up a meeting. Thank you !
Comment: Research Project - Expanding search funtionality on the GEO database by Sean Davis 21k
You can use the Bioconductor Annotation packages for the Affymetrix chips of interest. - https://bioconductor.org/packages/release/BiocVie…
Votes
Answer: DESeq2 time course using fitted splines
Answer: DESeq2 time course using fitted splines
Comment: Difference between enrichGO results and Enrichr website results
Answer: Struggling to convert a large list of non-model genes into human orthologs, any
A: makeContrasts from limma overides "i" as a varible
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Popular Question to Gordon Smyth 51k
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Scholar to Martin Morgan 25k
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