Bioconductor GFF3

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dexseq python gtf gff3 annotation

4.9 years ago Raito92 ▴ 60

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annotation gff3 gff genome

updated 5.6 years ago by Michael Lawrence ★ 11k • written 5.6 years ago by mictadlo ▴ 10

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parclip bedtools bed files gff3

7.2 years ago linuxborg2 • 0

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txdb gff3 polycistronic transcript

7.4 years ago Piotr Gawronski • 0

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GenomicFeatures GFF3

updated 8.0 years ago by Valerie Obenchain ★ 6.8k • written 8.0 years ago by Dario Strbenac ★ 1.6k

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AnnotationHub Gencode GFF3 FASTA News

9.6 years ago Sonali Arora ▴ 390

6 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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