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GFF3
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reset
1
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2
replies
1.9k
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
4.8 years ago • updated 4.7 years ago
Raito92
▴ 60
2
votes
2
replies
2.3k
views
Filtering GFF3 file
annotation
gff3
gff
genome
updated 5.4 years ago by
Michael Lawrence
★ 11k • written 5.4 years ago by
mictadlo
▴ 10
0
votes
0
replies
1.2k
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
7.0 years ago
linuxborg2
• 0
2
votes
2
replies
5.1k
views
How to prepare TxDb object using makeTxDbFromGFF with polycistronic transcripts?
txdb
gff3
polycistronic transcript
7.2 years ago
Piotr Gawronski
• 0
9
votes
3
replies
3.6k
views
Importing Gene Symbols with makeTxDbFromGFF
GenomicFeatures
GFF3
updated 7.9 years ago by
Valerie Obenchain
★ 6.8k • written 7.9 years ago by
Dario Strbenac
★ 1.5k
2
votes
0
replies
3.8k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
9.4 years ago
Sonali Arora
▴ 390
6 results • Page
1 of 1
Recent ...
Replies
Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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shepherl
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bastien_chassagnol
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Maria Doyle
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