Showing : GENESIS • reset
0
votes
0
replies
301
views
Conditional analysis
GENESIS
10 months ago SuperDad • 0
0
votes
1
reply
600
views
GENESIS: error in crossprod
GENESIS
13 months ago Stephanie M. Gogarten ▴ 890
0
votes
2
replies
910
views
GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 16 months ago by ▴ 890 • written 16 months ago by • 0
0
votes
2
replies
745
views
SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 17 months ago by ▴ 890 • written 17 months ago by • 0
1
vote
1
reply
929
views
HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 17 months ago by 68k • written 17 months ago by ▴ 10
0
votes
0
replies
579
views
How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
17 months ago mailtoshivam13 • 0
2
votes
5
replies
1.2k
views
assocTestSingle output with GxE
GENESIS
updated 21 months ago by ▴ 890 • written 21 months ago by • 0
0
votes
1
reply
619
views
Reference categories for factors
assocTestSingle GENESIS
written 2.1 years ago by • 0
0
votes
2
replies
1.0k
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
2.4 years ago Monica • 0
1
vote
2
replies
5.1k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.2 years ago by • 0 • written 5.3 years ago by • 0
0
votes
1
reply
1.1k
views
Approximations to Est and Est.SE in GENESIS
GENESIS
4.3 years ago Stephanie M. Gogarten ▴ 890
0
votes
0
replies
898
views
X chromosome analyses for males in GENESIS
GENESIS
4.4 years ago Stephanie M. Gogarten ▴ 890
0
votes
3
replies
1.9k
views
Alternate allele for GENESIS?
genesis effect allele association analysis
updated 4.6 years ago by ▴ 890 • written 4.6 years ago by • 0
0
votes
1
reply
1.0k
views
using GENESIS R package with non-human species
genesis gwastools
4.7 years ago Stephanie M. Gogarten ▴ 890
0
votes
2
replies
1.2k
views
Association testing model in GENESIS
genesis
updated 4.7 years ago by ▴ 890 • written 4.7 years ago by • 0
0
votes
1
reply
1.5k
views
GENESIS multiple gds files
genesis gds SeqVarData
updated 4.8 years ago by ▴ 890 • written 4.8 years ago by • 0
0
votes
8
replies
2.0k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
5.1 years ago alipka ▴ 10
2
votes
1
reply
914
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 5.2 years ago by ▴ 890 • written 5.2 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
5.3 years ago astridite • 0
2
votes
1
reply
1.0k
views
Why did the Wald test disappear from GENESIS?
genesis
5.4 years ago Stephanie M. Gogarten ▴ 890
1
vote
3
replies
1.6k
views
Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
5.4 years ago Corey.Cox • 0
1
vote
1
reply
1.3k
views
Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 5.5 years ago by ▴ 890 • written 5.5 years ago by ▴ 10
3
votes
6
replies
1.9k
views
Interpreting the output of score test using GENESIS
genesis output score
updated 5.5 years ago by ▴ 890 • written 5.5 years ago by ▴ 10
2
votes
4
replies
1.4k
views
Sporadic missingness with admixmmap
genesis admixmap
updated 5.6 years ago by ▴ 890 • written 5.6 years ago by • 0
0
votes
3
replies
2.3k
views
Can't install Genesis
Genesis Installation
updated 5.6 years ago by ★ 6.6k • written 5.6 years ago by ▴ 10
0
votes
3
replies
1.5k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.7 years ago by ▴ 70 • written 5.7 years ago by • 0
6
votes
11
replies
3.4k
views
Genesis: doubts with admixMAPMM
genesis admixmap
updated 5.9 years ago by ▴ 890 • written 5.9 years ago by • 0
0
votes
1
reply
1.2k
views
betas for binary outcome
genesis
6.0 years ago Stephanie M. Gogarten ▴ 890
0
votes
13
replies
3.0k
views
GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 6.1 years ago by ▴ 890 • written 6.1 years ago by • 0
4
votes
2
replies
2.1k
views
Imputed dosages in GENESIS
genesis gwastools seqarray
6.5 years ago • updated 6.2 years ago Stephanie M. Gogarten ▴ 890
0
votes
1
reply
1.2k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.2 years ago naglemi ▴ 10
1
vote
1
reply
1.2k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ▴ 10
1
vote
1
reply
1.2k
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 6.4 years ago by ▴ 890 • written 6.4 years ago by • 0
0
votes
1
reply
1.1k
views
Using previously calculated PCs in GENESIS
genesis snprelate
6.5 years ago Stephanie M. Gogarten ▴ 890
0
votes
1
reply
1.3k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.5 years ago by ▴ 30 • written 6.5 years ago by ▴ 10
0
votes
1
reply
994
views
selecting SNPs and samples in GENESIS
genesis
6.7 years ago Stephanie M. Gogarten ▴ 890
0
votes
3
replies
1.5k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.7 years ago by ▴ 70 • written 6.7 years ago by ▴ 10
3
votes
4
replies
1.8k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.7 years ago by ▴ 70 • written 6.7 years ago by ▴ 10
2
votes
8
replies
2.1k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
6.9 years ago GENOMIC_region • 0
0
votes
7
replies
2.2k
views
GENESIS: king2mat: subscript out of bounds
genesis
6.9 years ago Stephanie M. Gogarten ▴ 890
40 results • Page 1 of 1
Recent ...
Replies
Comment: Issue with Soft-Thresholding in WGCNA by dirty.cougar.risi • 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
You can use the `AnnotationHub` ``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% sna…
Answer: List of Deprecated Packages for Bioc3.20 by shepherl 4.1k
HTqPCR has been fixed and will be re-instated in 3.21
Votes
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
Awards • All
Scholar to Michael Love 43k
Popular Question to Rob • 0
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
Popular Question to Le • 0
Locations • All
Ireland, 8 minutes ago
United Kingdom, 12 minutes ago
Italy, 12 minutes ago
Serbia, 13 minutes ago
Czechia, 20 minutes ago
Traffic: 737 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6