Bioconductor Exon Usage

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DEXSeq Splicing Exon Usage

5.0 years ago gunjan.dikshit • 0

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dexseq genomicalignments exon usage

7.3 years ago igor ▴ 50

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DEXSeq differential exon usage exon usage

updated 9.2 years ago by Alejandro Reyes ★ 1.9k • written 9.2 years ago by biominer ▴ 10

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dexseq logfoldchange exon usage

9.2 years ago Assa Yeroslaviz ★ 1.5k

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dexseq exon usage

updated 9.8 years ago by Alejandro Reyes ★ 1.9k • written 9.8 years ago by Xavier Pastor ▴ 10

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Comment: Csaw normalization strategies - general inquiry by Luca • 0

Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10

Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …

Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k

My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …

Answer: Csaw normalization strategies - general inquiry by Aaron Lun ★ 28k

IIUC you're saying that 68 and 71 are more similar to each other than to all of the other replicates (more efficient IP, if I'm reading you…

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Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

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