Showing : Error • reset
0
votes
7
replies
3.6k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 17 months ago by 68k • written 17 months ago by • 0
12
votes
10
replies
14k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 12 months ago by • 0 • written 17 months ago by ▴ 20
0
votes
0
replies
528
views
proActiv - Error in estimateSizeFactorsForMatrix when using the proActiv function
proActiv error estimateSizeFactorsForMatrix
17 months ago Chris • 0
0
votes
1
reply
1.1k
views
Problems when running GDC_prepare in R
TCGAbiolinks error GDC_prepare
17 months ago leon • 0
0
votes
3
replies
1.0k
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config DiffBind Error
updated 20 months ago by ★ 5.2k • written 20 months ago by • 0
0
votes
17
replies
4.4k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2 differential expression error
updated 22 months ago by • 0 • written 7.5 years ago by • 0
0
votes
1
reply
750
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB easyrun error mm10 Mus_musculus_Data
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
0
replies
754
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
24 months ago aymanreffai • 0
0
votes
8
replies
1.7k
views
fail to annotate chromosome data to single cell object
error SingleCell annotate
updated 16 months ago by • 0 • written 2.1 years ago by • 0
0
votes
2
replies
845
views
Error message trying to open downloaded package
error DEP
2.2 years ago • updated 2.1 years ago kcpaul168 • 0
0
votes
0
replies
804
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult DEqMS sca.adj.pval error p-value
2.5 years ago Bastian • 0
0
votes
3
replies
1.4k
views
tximport error
error tximport
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
0
votes
3
replies
2.9k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
votes
7
replies
1.8k
views
Centos 7.8, custom-compiled R-4.1: iPath_1.0.0 won't install
error iPath R compilation
3.2 years ago wjb2130 • 0
0
votes
2
replies
1.1k
views
Error in TFBSTools at SitesetList
error TFBSTools R
3.4 years ago HELEN • 0
4
votes
9
replies
4.4k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 3.8 years ago by ★ 6.6k • written 4.1 years ago by ▴ 20
0
votes
3
replies
1.2k
views
bioconductor.org not reachable from EU region
error http429 server
4.0 years ago • updated 3.9 years ago ashu.upadhyay2206 • 0
0
votes
2
replies
1.8k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 4.1 years ago by 68k • written 4.1 years ago by • 0
1
vote
2
replies
3.5k
views
error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
4.1 years ago james • 0
3
votes
4
replies
3.5k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error mac DESeq2 GenomeInfoDb R
4.3 years ago • updated 4.2 years ago Dan ▴ 20
1
vote
1
reply
1.2k
views
Errors in installing RforProteomics package
error RforProteomics Install
updated 4.4 years ago by ★ 6.6k • written 4.4 years ago by • 0
0
votes
1
reply
940
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
4.8 years ago • updated 4.7 years ago akhaira • 0
6
votes
6
replies
1.6k
views
Suggestion for next revision of edgeR User Guide re Design matrix setup
edger error
updated 4.8 years ago by 52k • written 4.8 years ago by • 0
0
votes
14
replies
3.1k
views
annFUN error TOPGO
TOPGO annFUN error
updated 5.0 years ago by ★ 4.0k • written 5.0 years ago by • 0
0
votes
0
replies
817
views
Error on FindOptimalBinning function
bhc error
5.0 years ago pavel.granalacant • 0
0
votes
0
replies
1.2k
views
Multicollinearity and pR2Y =0.1
opls-da error multicollinearity
5.2 years ago adriana.roca-fernandez • 0
0
votes
1
reply
1.3k
views
boxplot Error in Bioconductor
boxplot bioconductor R error
5.3 years ago l154359 • 0
0
votes
4
replies
1.2k
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome peaks error Job
updated 5.3 years ago by 68k • written 5.3 years ago by • 0
0
votes
5
replies
2.2k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 5.4 years ago by ▴ 20 • written 5.4 years ago by • 0
0
votes
3
replies
1.1k
views
Error in E-Eb Limma package
limma error E-Eb
updated 5.4 years ago by 52k • written 5.4 years ago by • 0
4
votes
7
replies
1.7k
views
bam files to hilbert curve
HilbertCurve error bamfiles GRobject
5.5 years ago adklts • 0
0
votes
6
replies
9.4k
views
Rhtslib - install error
Rhtslib installation error zlib
updated 5.5 years ago by • 0 • written 6.4 years ago by • 0
0
votes
1
reply
1.7k
views
DiffBind dba error
DiffBind dba R error
updated 5.6 years ago by ★ 5.2k • written 5.8 years ago by • 0
0
votes
1
reply
1.5k
views
Help with installation of readat package
readat error
updated 5.7 years ago by 4.1k • written 5.7 years ago by • 0
2
votes
2
replies
1.9k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 5.7 years ago by ▴ 270 • written 5.7 years ago by ▴ 10
0
votes
1
reply
2.4k
views
R: oligo packages install error
oligo packages error
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
0
votes
0
replies
1.1k
views
Error in parseGenBank
genbankr parseGenBank gbk error
5.8 years ago ashley.dederich • 0
2
votes
3
replies
1.4k
views
How can I overcome the error of "No residual degrees of freedom in linear model fits"?
limma microarray error
updated 5.8 years ago by ★ 1.6k • written 5.8 years ago by ▴ 80
0
votes
6
replies
5.0k
views
Error in getOneSeqFromBSgenomeMultipleSequences During singeR tutorial
error
5.8 years ago dfcarril • 0
0
votes
4
replies
2.3k
views
DESeq2 compare all_vs_all levels error
deseq2 error RNAseq
updated 5.8 years ago by ★ 1.4k • written 5.8 years ago by ▴ 30
0
votes
3
replies
1.2k
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops cn.mops error
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
6
replies
2.4k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.9 years ago by • 0 • written 5.9 years ago by ▴ 10
0
votes
8
replies
3.2k
views
tximport command error
tx2gene txi error
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
2
votes
6
replies
2.0k
views
EdgeR glmTreat error
edger error
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
1
vote
1
reply
1.2k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt error
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
error wgcna affymetrix data
updated 6.0 years ago by ★ 3.0k • written 6.0 years ago by • 0
2
votes
6
replies
2.5k
views
featurecounts Rsubread ERROR on exon_id
R error software error Rsubread featurecounts
updated 6.0 years ago by ★ 3.6k • written 6.0 years ago by • 0
2
votes
3
replies
3.6k
views
DESeq2- preliminary study no replicates
deseq2 replicates error DESeqDataSetFromMatrix
updated 6.0 years ago by 43k • written 6.0 years ago by • 0
1
vote
1
reply
1.3k
views
Error in getBM(c("affy_rice", "ensembl_gene_id", "entrezgene", "external_gene_name"), : could not find function "featureNames"
annotation error biomaRT affy ricedataset
updated 6.0 years ago by ★ 6.6k • written 6.0 years ago by • 0
1
vote
2
replies
2.6k
views
Errors installing mzR package
proteomics error
updated 6.1 years ago by 1.6k • written 6.1 years ago by • 0
50 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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