Showing : Error • reset
0
votes
7
replies
3.1k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 15 months ago by 67k • written 15 months ago by • 0
12
votes
10
replies
13k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 10 months ago by • 0 • written 15 months ago by ▴ 20
0
votes
0
replies
485
views
proActiv - Error in estimateSizeFactorsForMatrix when using the proActiv function
proActiv error estimateSizeFactorsForMatrix
15 months ago Chris • 0
0
votes
1
reply
905
views
Problems when running GDC_prepare in R
TCGAbiolinks error GDC_prepare
15 months ago leon • 0
0
votes
3
replies
955
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config DiffBind Error
updated 18 months ago by ★ 5.2k • written 18 months ago by • 0
0
votes
17
replies
4.1k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2 differential expression error
updated 19 months ago by • 0 • written 7.3 years ago by • 0
0
votes
1
reply
702
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB easyrun error mm10 Mus_musculus_Data
updated 21 months ago by 67k • written 21 months ago by • 0
0
votes
0
replies
715
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
21 months ago aymanreffai • 0
0
votes
8
replies
1.5k
views
fail to annotate chromosome data to single cell object
error SingleCell annotate
updated 14 months ago by • 0 • written 23 months ago by • 0
0
votes
2
replies
786
views
Error message trying to open downloaded package
error DEP
24 months ago • updated 23 months ago kcpaul168 • 0
0
votes
0
replies
768
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult DEqMS sca.adj.pval error p-value
2.3 years ago Bastian • 0
0
votes
3
replies
1.3k
views
tximport error
error tximport
updated 2.4 years ago by 43k • written 2.4 years ago by • 0
0
votes
3
replies
2.8k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 2.5 years ago by 67k • written 2.5 years ago by • 0
0
votes
7
replies
1.7k
views
Centos 7.8, custom-compiled R-4.1: iPath_1.0.0 won't install
error iPath R compilation
3.1 years ago • updated 3.0 years ago wjb2130 • 0
0
votes
2
replies
1.1k
views
Error in TFBSTools at SitesetList
error TFBSTools R
3.3 years ago • updated 3.2 years ago HELEN • 0
4
votes
9
replies
4.3k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 3.7 years ago by ★ 6.6k • written 3.9 years ago by ▴ 20
0
votes
3
replies
1.1k
views
bioconductor.org not reachable from EU region
error http429 server
3.8 years ago ashu.upadhyay2206 • 0
0
votes
2
replies
1.7k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 3.9 years ago by 67k • written 3.9 years ago by • 0
1
vote
2
replies
3.4k
views
error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
3.9 years ago james • 0
3
votes
4
replies
3.4k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error mac DESeq2 GenomeInfoDb R
4.1 years ago • updated 4.0 years ago Dan ▴ 20
1
vote
1
reply
1.2k
views
Errors in installing RforProteomics package
error RforProteomics Install
updated 4.2 years ago by ★ 6.6k • written 4.2 years ago by • 0
0
votes
1
reply
907
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
4.6 years ago akhaira • 0
6
votes
6
replies
1.5k
views
Suggestion for next revision of edgeR User Guide re Design matrix setup
edger error
updated 4.7 years ago by 52k • written 4.7 years ago by • 0
0
votes
14
replies
2.9k
views
annFUN error TOPGO
TOPGO annFUN error
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
0
votes
0
replies
774
views
Error on FindOptimalBinning function
bhc error
4.9 years ago pavel.granalacant • 0
0
votes
0
replies
1.1k
views
Multicollinearity and pR2Y =0.1
opls-da error multicollinearity
5.0 years ago adriana.roca-fernandez • 0
0
votes
1
reply
1.2k
views
boxplot Error in Bioconductor
boxplot bioconductor R error
5.1 years ago l154359 • 0
0
votes
4
replies
1.2k
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome peaks error Job
updated 5.1 years ago by 67k • written 5.1 years ago by • 0
0
votes
5
replies
2.0k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 5.2 years ago by ▴ 20 • written 5.2 years ago by • 0
0
votes
3
replies
1.0k
views
Error in E-Eb Limma package
limma error E-Eb
updated 5.3 years ago by 52k • written 5.3 years ago by • 0
4
votes
7
replies
1.6k
views
bam files to hilbert curve
HilbertCurve error bamfiles GRobject
5.4 years ago adklts • 0
0
votes
6
replies
9.1k
views
Rhtslib - install error
Rhtslib installation error zlib
updated 5.4 years ago by • 0 • written 6.3 years ago by • 0
0
votes
1
reply
1.6k
views
DiffBind dba error
DiffBind dba R error
updated 5.4 years ago by ★ 5.2k • written 5.6 years ago by • 0
0
votes
1
reply
1.5k
views
Help with installation of readat package
readat error
updated 5.5 years ago by 4.1k • written 5.5 years ago by • 0
2
votes
2
replies
1.8k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 5.6 years ago by ▴ 270 • written 5.6 years ago by ▴ 10
0
votes
1
reply
2.3k
views
R: oligo packages install error
oligo packages error
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
0
votes
0
replies
1.0k
views
Error in parseGenBank
genbankr parseGenBank gbk error
5.6 years ago ashley.dederich • 0
2
votes
3
replies
1.3k
views
How can I overcome the error of "No residual degrees of freedom in linear model fits"?
limma microarray error
updated 5.6 years ago by ★ 1.5k • written 5.6 years ago by ▴ 80
0
votes
6
replies
4.8k
views
Error in getOneSeqFromBSgenomeMultipleSequences During singeR tutorial
error
5.6 years ago dfcarril • 0
0
votes
4
replies
2.2k
views
DESeq2 compare all_vs_all levels error
deseq2 error RNAseq
updated 5.6 years ago by ★ 1.4k • written 5.6 years ago by ▴ 30
0
votes
3
replies
1.2k
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops cn.mops error
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
0
votes
6
replies
2.3k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.7 years ago by • 0 • written 5.7 years ago by ▴ 10
0
votes
8
replies
3.1k
views
tximport command error
tx2gene txi error
updated 5.7 years ago by 67k • written 5.7 years ago by • 0
2
votes
6
replies
1.9k
views
EdgeR glmTreat error
edger error
updated 5.8 years ago by 67k • written 5.8 years ago by • 0
1
vote
1
reply
1.2k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt error
updated 5.8 years ago by 67k • written 5.8 years ago by ▴ 10
0
votes
1
reply
967
views
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
error wgcna affymetrix data
updated 5.8 years ago by ★ 3.0k • written 5.8 years ago by • 0
2
votes
6
replies
2.4k
views
featurecounts Rsubread ERROR on exon_id
R error software error Rsubread featurecounts
updated 5.8 years ago by ★ 3.6k • written 5.8 years ago by • 0
2
votes
3
replies
3.5k
views
DESeq2- preliminary study no replicates
deseq2 replicates error DESeqDataSetFromMatrix
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
1
vote
1
reply
1.3k
views
Error in getBM(c("affy_rice", "ensembl_gene_id", "entrezgene", "external_gene_name"), : could not find function "featureNames"
annotation error biomaRT affy ricedataset
updated 5.8 years ago by ★ 6.6k • written 5.8 years ago by • 0
1
vote
2
replies
2.5k
views
Errors installing mzR package
proteomics error
updated 5.9 years ago by 1.6k • written 5.9 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Awards • All
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
Popular Question to bastien_chassagnol • 0
Popular Question to Maria Doyle ▴ 100
Popular Question to Robert Ivanek ▴ 750
Locations • All
Canada, 25 minutes ago
United States, 56 minutes ago
UPF, Barcelona, Spain, 1 hour ago
France/Marseille/Inserm, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
Traffic: 928 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6