Showing : Error • reset
0
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7
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3.8k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 17 months ago by 68k • written 17 months ago by • 0
12
votes
10
replies
15k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 13 months ago by • 0 • written 18 months ago by ▴ 20
0
votes
0
replies
537
views
proActiv - Error in estimateSizeFactorsForMatrix when using the proActiv function
proActiv error estimateSizeFactorsForMatrix
18 months ago Chris • 0
0
votes
1
reply
1.2k
views
Problems when running GDC_prepare in R
TCGAbiolinks error GDC_prepare
18 months ago leon • 0
0
votes
3
replies
1.0k
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config DiffBind Error
updated 21 months ago by ★ 5.2k • written 21 months ago by • 0
0
votes
17
replies
4.4k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2 differential expression error
updated 22 months ago by • 0 • written 7.6 years ago by • 0
0
votes
1
reply
760
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB easyrun error mm10 Mus_musculus_Data
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
0
replies
767
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
2.0 years ago aymanreffai • 0
0
votes
8
replies
1.7k
views
fail to annotate chromosome data to single cell object
error SingleCell annotate
updated 17 months ago by • 0 • written 2.1 years ago by • 0
0
votes
2
replies
862
views
Error message trying to open downloaded package
error DEP
2.2 years ago kcpaul168 • 0
0
votes
0
replies
814
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult DEqMS sca.adj.pval error p-value
2.5 years ago Bastian • 0
0
votes
3
replies
1.4k
views
tximport error
error tximport
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
0
votes
3
replies
3.0k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
7
replies
1.8k
views
Centos 7.8, custom-compiled R-4.1: iPath_1.0.0 won't install
error iPath R compilation
3.3 years ago wjb2130 • 0
0
votes
2
replies
1.2k
views
Error in TFBSTools at SitesetList
error TFBSTools R
3.5 years ago HELEN • 0
4
votes
9
replies
4.5k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 3.9 years ago by ★ 6.6k • written 4.2 years ago by ▴ 20
0
votes
3
replies
1.2k
views
bioconductor.org not reachable from EU region
error http429 server
4.0 years ago ashu.upadhyay2206 • 0
0
votes
2
replies
1.9k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 4.1 years ago by 68k • written 4.1 years ago by • 0
1
vote
2
replies
3.6k
views
error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
4.2 years ago james • 0
3
votes
4
replies
3.5k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error mac DESeq2 GenomeInfoDb R
4.3 years ago • updated 4.2 years ago Dan ▴ 20
1
vote
1
reply
1.2k
views
Errors in installing RforProteomics package
error RforProteomics Install
updated 4.4 years ago by ★ 6.6k • written 4.4 years ago by • 0
0
votes
1
reply
947
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
4.8 years ago akhaira • 0
6
votes
6
replies
1.7k
views
Suggestion for next revision of edgeR User Guide re Design matrix setup
edger error
updated 4.9 years ago by 52k • written 4.9 years ago by • 0
0
votes
14
replies
3.1k
views
annFUN error TOPGO
TOPGO annFUN error
updated 5.1 years ago by ★ 4.0k • written 5.1 years ago by • 0
0
votes
0
replies
826
views
Error on FindOptimalBinning function
bhc error
5.1 years ago pavel.granalacant • 0
0
votes
0
replies
1.2k
views
Multicollinearity and pR2Y =0.1
opls-da error multicollinearity
5.2 years ago adriana.roca-fernandez • 0
0
votes
1
reply
1.3k
views
boxplot Error in Bioconductor
boxplot bioconductor R error
5.3 years ago l154359 • 0
0
votes
4
replies
1.2k
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome peaks error Job
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
0
votes
5
replies
2.2k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 5.4 years ago by ▴ 20 • written 5.4 years ago by • 0
0
votes
3
replies
1.1k
views
Error in E-Eb Limma package
limma error E-Eb
updated 5.5 years ago by 52k • written 5.5 years ago by • 0
4
votes
7
replies
1.7k
views
bam files to hilbert curve
HilbertCurve error bamfiles GRobject
5.6 years ago adklts • 0
0
votes
6
replies
9.4k
views
Rhtslib - install error
Rhtslib installation error zlib
updated 5.6 years ago by • 0 • written 6.5 years ago by • 0
0
votes
1
reply
1.7k
views
DiffBind dba error
DiffBind dba R error
updated 5.7 years ago by ★ 5.2k • written 5.9 years ago by • 0
0
votes
1
reply
1.5k
views
Help with installation of readat package
readat error
updated 5.7 years ago by 4.1k • written 5.7 years ago by • 0
2
votes
2
replies
1.9k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 5.8 years ago by ▴ 270 • written 5.8 years ago by ▴ 10
0
votes
1
reply
2.5k
views
R: oligo packages install error
oligo packages error
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
0
replies
1.1k
views
Error in parseGenBank
genbankr parseGenBank gbk error
5.8 years ago ashley.dederich • 0
2
votes
3
replies
1.4k
views
How can I overcome the error of "No residual degrees of freedom in linear model fits"?
limma microarray error
updated 5.8 years ago by ★ 1.6k • written 5.8 years ago by ▴ 80
0
votes
6
replies
5.1k
views
Error in getOneSeqFromBSgenomeMultipleSequences During singeR tutorial
error
5.8 years ago dfcarril • 0
0
votes
4
replies
2.3k
views
DESeq2 compare all_vs_all levels error
deseq2 error RNAseq
updated 5.8 years ago by ★ 1.4k • written 5.8 years ago by ▴ 30
0
votes
3
replies
1.2k
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops cn.mops error
updated 5.9 years ago by 25k • written 5.9 years ago by • 0
0
votes
6
replies
2.4k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 6.0 years ago by • 0 • written 6.0 years ago by ▴ 10
0
votes
8
replies
3.3k
views
tximport command error
tx2gene txi error
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
2
votes
6
replies
2.0k
views
EdgeR glmTreat error
edger error
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
1
vote
1
reply
1.2k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt error
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
error wgcna affymetrix data
updated 6.1 years ago by ★ 3.0k • written 6.1 years ago by • 0
2
votes
6
replies
2.5k
views
featurecounts Rsubread ERROR on exon_id
R error software error Rsubread featurecounts
updated 6.1 years ago by ★ 3.6k • written 6.1 years ago by • 0
2
votes
3
replies
3.7k
views
DESeq2- preliminary study no replicates
deseq2 replicates error DESeqDataSetFromMatrix
updated 6.1 years ago by 43k • written 6.1 years ago by • 0
1
vote
1
reply
1.3k
views
Error in getBM(c("affy_rice", "ensembl_gene_id", "entrezgene", "external_gene_name"), : could not find function "featureNames"
annotation error biomaRT affy ricedataset
updated 6.1 years ago by ★ 6.6k • written 6.1 years ago by • 0
1
vote
2
replies
2.7k
views
Errors installing mzR package
proteomics error
updated 6.1 years ago by 1.6k • written 6.1 years ago by • 0
50 results • Page 1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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