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EPICv2manifest
•
reset
1
vote
2
replies
1.1k
views
CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2
EPICv2manifest
13 days ago • updated 6 days ago
Joshua Llano
• 0
0
votes
2
replies
204
views
Conumee2 - CNV.summaryplot()
conumee
CopyNumberVariation
MethylationAnalysis
methylationArrayAnalysis
EPICv2manifest
updated 29 days ago by
James W. MacDonald
68k • written 29 days ago by
luca.mangherini
• 0
0
votes
0
replies
214
views
Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf
minfiDataEPIC
MethylationArrayData
MethylationArray
EPICv2manifest
7 weeks ago
charlie.wright
• 0
0
votes
2
replies
363
views
MissMethyl failed to use gometh function for EPICv2
missMethyl
EPICv2manifest
updated 12 weeks ago by
James W. MacDonald
68k • written 12 weeks ago by
maximuscfyeung
• 0
1
vote
2
replies
401
views
Epic v2 Annotation CpG_maf source?
MethylationArray
methy
EPICv2manifest
4 months ago
Meghan
• 0
2
votes
2
replies
486
views
preprocessIllumina error with EPICv2 array
minfi
EPICv2manifest
4 months ago
Rakesh
• 0
0
votes
0
replies
359
views
EPIC v2 annotation and BigWig
EPICv2manifest
IlluminaHumanMethylationEPICv2anno.20a1.hg38
9 months ago
MajaVu
• 0
0
votes
0
replies
508
views
Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi
EPICv2manifest
MethylAid
9 months ago
pcibin
• 0
1
vote
3
replies
1.4k
views
SeSAMe DMR for EPIC V2
sesame
EPICv2manifest
epicv2
9 months ago
luca.s
▴ 50
1
vote
3
replies
2.4k
views
CombineArrays for EPIC and EPIC V2
EPICV1
Methylation
combineArrays
minifi
EPICv2manifest
updated 5 months ago by
rania.alanany
• 0 • written 12 months ago by
Kim
• 0
1
vote
6
replies
1.2k
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 11 months ago by
Tim Peters
▴ 230 • written 12 months ago by
s.malik
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
solarsunyy
• 0
Deploy powerful missiles that generate large-scale explosions, resulting in the [solar smash online][1] formation of substantial craters on…
Comment: Phyloseq: How to add sample table to phyloseq object
by
chillykean
• 0
@[Chill Guy Clicker][1]: You can add sample_table by creating a data frame containing sample information and using sample_data(myobject) <-…
Comment: Issue with Soft-Thresholding in WGCNA
by
dirty.cougar.risi
• 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash
by
Michael Love
43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
by
James W. MacDonald
68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Votes
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
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